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NC_028770.1__YP_009196323.1__AVV52_gp70__00070

Bact-Vir

NC_028770.1__YP_009196323.1__AVV52_gp70__00070

Identity

Accession:
NC_028770 ↗
Kingdom:
phage

Quality

82.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mesyanzhinovviridae› Abidjanvirus› Pseudomonas_phage_PaMx11

TaxID: 1175657

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-70
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3duzA02 2.40.50.710 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.77 52.0 4.70e-01 71.8% 55.6%
2zxrA01 2.40.50.460 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 45.0 3.03e-01 84.6% 17.7%
7x68A01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.63 54.0 5.04e-01 100.0% 86.0%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.62 47.0 3.21e-01 87.2% 29.3%
3ce9A01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 41.0 2.75e-01 71.8% 31.0%
3bt7A02 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 40.0 2.88e-01 76.9% 52.4%
3ozoA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.59 46.0 2.99e-01 89.7% 91.3%
6n59A02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 3.19e-01 71.8% 42.9%
1pz4A00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.54 38.0 3.09e-01 100.0% 32.7%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.59e-01 87.2% 60.4%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 39.0 3.50e-01 76.9% 50.0%
3uepA00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.52 37.0 3.06e-01 79.5% 62.4%
1i24A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 35.0 2.21e-01 74.4% 9.7%
2xrfC00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 36.0 2.19e-01 76.9% 33.9%
4tl8F00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 35.0 2.33e-01 74.4% 79.8%
3g1nA02 3.30.2160.10 Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.51 39.0 3.19e-01 89.7% 77.5%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.67 53.0 3.28e-01 100.0% 21.4%
4027396 389.1.1.158 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF29979 0.59 38.0 4.04e-01 74.4% 74.3%
3759576 2484.1.1.288 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PML_C 0.59 50.0 3.07e-01 100.0% 49.8%
3569539 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 49.0 3.25e-01 100.0% 71.1%
3802019 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.57 47.0 3.03e-01 100.0% 46.0%
3909399 233.1.1.0 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain 0.57 44.0 3.68e-01 94.9% 87.5%
4808044 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.57 42.0 4.04e-01 82.1% 84.8%
5042869 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.55 39.0 3.51e-01 82.1% 53.8%
3727300 7581.1.1.19 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N+Thiolase_C 0.53 40.0 2.36e-01 84.6% 77.3%
3972195 7523.1.1.15 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.53 41.0 2.98e-01 100.0% 30.9%
3947992 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.52 40.0 3.02e-01 92.3% 86.7%
3752375 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.51 41.0 2.65e-01 92.3% 67.2%
3871990 391.1.2.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.50 34.0 3.15e-01 74.4% 47.3%