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NC_028777.1__YP_009196905.1__CPT_Stills20__00020
Bact-VirNC_028777.1__YP_009196905.1__CPT_Stills20__00020
Identity
- Accession:
- NC_028777 ↗
- Kingdom:
- phage
Quality
88.3
mean pLDDT
Taxonomy
TaxID: 1610833
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-64
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.66 | 58.0 | 4.72e-01 | 100.0% | 61.1% |
| 4jcwA02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.64 | 48.0 | 4.20e-01 | 100.0% | 53.3% |
| 2z0uA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.63 | 56.0 | 4.30e-01 | 100.0% | 52.3% |
| 4fxdA05 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.62 | 54.0 | 4.33e-01 | 100.0% | 74.4% |
| 3c12A02 | 2.60.40.4070 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 53.0 | 4.66e-01 | 100.0% | 73.6% |
| 3hr8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.61 | 41.0 | 3.78e-01 | 77.2% | 53.3% |
| 2yuxA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 51.0 | 4.19e-01 | 100.0% | 50.9% |
| 1ulvA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 45.0 | 4.06e-01 | 100.0% | 57.0% |
| 2edyA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 48.0 | 4.03e-01 | 100.0% | 50.5% |
| 3d30A02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.59 | 43.0 | 3.79e-01 | 100.0% | 50.0% |
| 1lu4A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 47.0 | 3.62e-01 | 89.5% | 59.7% |
| 1rh8A00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.59 | 52.0 | 3.90e-01 | 100.0% | 53.5% |
| 5eo9A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 51.0 | 4.18e-01 | 100.0% | 60.7% |
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 46.0 | 4.15e-01 | 100.0% | 61.6% |
| 1q15A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.57 | 40.0 | 2.79e-01 | 75.4% | 21.5% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.57 | 48.0 | 3.62e-01 | 100.0% | 48.7% |
| 6njeA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.56 | 46.0 | 3.03e-01 | 100.0% | 30.3% |
| 1ehiA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 49.0 | 3.69e-01 | 100.0% | 66.0% |
| 1xf1A05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 49.0 | 4.08e-01 | 100.0% | 62.4% |
| 6muwH00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.56 | 46.0 | 3.31e-01 | 100.0% | 91.8% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.55 | 43.0 | 3.90e-01 | 89.5% | 95.2% |
| 1ryp200 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.55 | 44.0 | 3.02e-01 | 94.7% | 70.0% |
| 4ic6C01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 45.0 | 3.72e-01 | 100.0% | 58.2% |
| 6x5vA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 44.0 | 3.82e-01 | 100.0% | 58.3% |
| 1zelA01 | 3.90.56.20 | Alpha Beta › Alpha-Beta Complex › Phenol Hydroxylase P2 Protein › replication protein C, winged helix domain | 0.53 | 38.0 | 3.29e-01 | 80.7% | 73.5% |
| 7jooC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 3.78e-01 | 100.0% | 84.5% |
| 1wgyA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 42.0 | 3.92e-01 | 98.2% | 94.7% |
| 7prrB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 38.0 | 2.76e-01 | 80.7% | 43.8% |
| 2z9iC01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 41.0 | 3.69e-01 | 100.0% | 60.9% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4072904 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.77 | 36.0 | 3.73e-01 | 98.2% | 45.5% |
| 1946133 | 11.1.1.276 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Peptidase_M60_C | 0.73 | 57.0 | 5.30e-01 | 100.0% | 67.1% |
| 3889864 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 51.0 | 5.19e-01 | 100.0% | 83.6% |
| 3675525 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.68 | 52.0 | 5.00e-01 | 100.0% | 72.1% |
| 3171117 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.66 | 52.0 | 4.41e-01 | 87.7% | 100.0% |
| 3222596 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.65 | 52.0 | 4.03e-01 | 91.2% | 95.6% |
| 4033337 | 302.2.1.0 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit | 0.65 | 55.0 | 4.47e-01 | 100.0% | 53.0% |
| 3499053 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.64 | 51.0 | 3.97e-01 | 91.2% | 96.3% |
| 3217685 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.62 | 45.0 | 4.57e-01 | 100.0% | 81.0% |
| 3472406 | 5.1.12.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains | 0.62 | 54.0 | 3.42e-01 | 100.0% | 43.7% |
| 3482731 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.61 | 38.0 | 2.85e-01 | 70.2% | 24.4% |
| 3791661 | 11.1.1.889 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26428 | 0.61 | 49.0 | 3.80e-01 | 100.0% | 38.6% |
| 3404658 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 52.0 | 4.71e-01 | 100.0% | 72.5% |
| 5083787 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 52.0 | 4.45e-01 | 100.0% | 62.1% |
| 2994234 | 4090.1.1.1 ↗ | a+b two layers › BH3703-like › BH3703-like › BH3703-like › YezG-like | 0.60 | 40.0 | 3.01e-01 | 71.9% | 70.8% |
| 4244248 | 210.1.3.2 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › CarA_N | 0.59 | 42.0 | 2.87e-01 | 75.4% | 21.5% |
| 2029587 | 1146.1.1.1 ↗ | few secondary structure elements › CRISPR-associated endonuclease C2c1 C-terminal domain › CRISPR-associated endonuclease C2c1 C-terminal domain › CRISPR-associated endonuclease C2c1 C-terminal domain › C2c1_Nuc-II | 0.59 | 52.0 | 4.15e-01 | 100.0% | 77.9% |
| 3740491 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.58 | 49.0 | 3.85e-01 | 100.0% | 44.4% |
| 3910828 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.57 | 48.0 | 3.76e-01 | 100.0% | 51.4% |
| 5047887 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.56 | 46.0 | 3.22e-01 | 96.5% | 98.6% |
| 3390587 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 39.0 | 3.89e-01 | 100.0% | 71.7% |
| 5060089 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 46.0 | 3.67e-01 | 100.0% | 52.0% |
| 3272119 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 46.0 | 3.61e-01 | 100.0% | 64.0% |
| 3937610 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.53 | 38.0 | 3.10e-01 | 80.7% | 99.2% |
| 3927505 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.53 | 44.0 | 4.05e-01 | 100.0% | 98.8% |
| 3714673 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.52 | 38.0 | 3.24e-01 | 100.0% | 44.8% |
| 5035195 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.52 | 40.0 | 3.02e-01 | 86.0% | 33.8% |
| 3622256 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.51 | 35.0 | 2.66e-01 | 71.9% | 61.3% |
| 3618882 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.51 | 45.0 | 2.97e-01 | 100.0% | 89.6% |
| 3385644 | 284.1.1.1 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C | 0.51 | 40.0 | 3.10e-01 | 87.7% | 54.5% |
| 4102860 | 4010.1.1.2 ↗ | a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 0.51 | 34.0 | 2.16e-01 | 96.5% | 12.6% |
| 5033638 | 812.1.1.0 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain | 0.50 | 37.0 | 3.36e-01 | 84.2% | 78.8% |