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NC_028796.1__YP_009198396.1__SEA_PHAYONCE_52__00052
Bact-VirNC_028796.1__YP_009198396.1__SEA_PHAYONCE_52__00052
Identity
- Accession:
- NC_028796 ↗
- Kingdom:
- phage
Quality
88.7
mean pLDDT
Taxonomy
TaxID: 1647302
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-69
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3sb1A01 | 3.30.1370.140 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › HupH hydrogenase expression protein, C-terminal domain | 0.75 | 51.0 | 4.50e-01 | 77.6% | 48.5% |
| 7dpyB01 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.70 | 47.0 | 4.36e-01 | 80.6% | 55.4% |
| 2rcqA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.69 | 49.0 | 3.79e-01 | 80.6% | 34.8% |
| 7lt2A01 | 3.30.460.90 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.68 | 46.0 | 3.12e-01 | 80.6% | 19.6% |
| 6mv2A01 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.67 | 47.0 | 4.14e-01 | 74.6% | 78.4% |
| 1p32B00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.66 | 55.0 | 4.05e-01 | 91.0% | 37.4% |
| 1xkpC00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.66 | 58.0 | 4.75e-01 | 100.0% | 85.7% |
| 4eqaC00 | 2.40.128.650 | Mainly Beta › Beta Barrel › Lipocalin › | 0.65 | 56.0 | 4.44e-01 | 100.0% | 96.7% |
| 6j9eJ00 | 3.30.160.560 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.65 | 53.0 | 5.42e-01 | 89.6% | 92.4% |
| 3fgbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.64 | 55.0 | 3.49e-01 | 97.0% | 51.3% |
| 3omlA03 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.64 | 48.0 | 3.19e-01 | 80.6% | 89.2% |
| 3ffzA04 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.63 | 48.0 | 3.60e-01 | 83.6% | 65.2% |
| 1m3qA01 | 3.30.310.40 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.63 | 46.0 | 4.21e-01 | 91.0% | 58.4% |
| 3ge2A00 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.63 | 49.0 | 4.53e-01 | 86.6% | 85.4% |
| 2dtcA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 43.0 | 3.67e-01 | 77.6% | 42.2% |
| 2plgA01 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.62 | 53.0 | 4.36e-01 | 100.0% | 80.3% |
| 3u4yA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 53.0 | 3.43e-01 | 97.0% | 51.1% |
| 1jofA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 52.0 | 3.31e-01 | 97.0% | 37.8% |
| 7fisA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.61 | 52.0 | 3.41e-01 | 95.5% | 70.5% |
| 2jozA01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.61 | 44.0 | 3.96e-01 | 77.6% | 88.5% |
| 3sreA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.60 | 50.0 | 3.29e-01 | 98.5% | 35.0% |
| 2mctA00 | 2.60.40.4250 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 49.0 | 4.26e-01 | 89.6% | 86.3% |
| 5hkeA01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.59 | 52.0 | 3.41e-01 | 100.0% | 57.0% |
| 6i8xA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 47.0 | 3.64e-01 | 86.6% | 39.6% |
| 4nkbA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.59 | 50.0 | 4.28e-01 | 97.0% | 57.9% |
| 4rs6A01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.58 | 49.0 | 4.09e-01 | 100.0% | 53.4% |
| 5h4eA02 | 3.30.920.50 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain | 0.58 | 46.0 | 3.79e-01 | 85.1% | 53.8% |
| 1vr8A00 | 3.40.1000.20 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like | 0.58 | 44.0 | 3.51e-01 | 89.6% | 40.0% |
| 7x36A01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.58 | 50.0 | 3.25e-01 | 98.5% | 76.3% |
| 6grrB01 | 3.30.457.10 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain | 0.58 | 49.0 | 4.74e-01 | 100.0% | 83.5% |
| 6jwfA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.58 | 49.0 | 3.09e-01 | 98.5% | 80.2% |
| 6jhpA01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.56 | 48.0 | 3.21e-01 | 100.0% | 96.3% |
| 1ok0A00 | 2.60.40.20 | Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-amylase inhibitor | 0.56 | 39.0 | 3.83e-01 | 89.6% | 68.9% |
| 4wj7D00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 46.0 | 3.87e-01 | 97.0% | 83.7% |
| 6z46V01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.55 | 49.0 | 3.57e-01 | 100.0% | 63.7% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 36.0 | 3.91e-01 | 74.6% | 95.9% |
| 4rnyA03 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.53 | 47.0 | 3.78e-01 | 97.0% | 59.4% |
| 1ekgA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.52 | 43.0 | 3.74e-01 | 100.0% | 73.1% |
| 3v0aB03 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 46.0 | 3.26e-01 | 100.0% | 90.7% |
| 2zutA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 37.0 | 3.83e-01 | 94.0% | 89.8% |
| 1y9lA00 | 2.40.128.230 | Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM | 0.51 | 41.0 | 3.63e-01 | 94.0% | 78.2% |
| 3vsmA01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.51 | 37.0 | 2.40e-01 | 79.1% | 37.8% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.51 | 42.0 | 3.56e-01 | 95.5% | 57.5% |
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.50 | 44.0 | 3.69e-01 | 100.0% | 60.8% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3219544 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.70 | 55.0 | 3.60e-01 | 97.0% | 19.4% |
| 4944549 | 9.1.1.72 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Biotin_lipoyl | 0.69 | 43.0 | 4.24e-01 | 83.6% | 58.6% |
| 1143749 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.69 | 48.0 | 5.16e-01 | 73.1% | 100.0% |
| 2516379 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.69 | 49.0 | 4.19e-01 | 74.6% | 76.4% |
| 3989333 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.69 | 45.0 | 4.79e-01 | 80.6% | 75.0% |
| 3242741 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.69 | 57.0 | 3.79e-01 | 100.0% | 22.8% |
| 2048263 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.68 | 51.0 | 3.94e-01 | 80.6% | 63.8% |
| 4992030 | 632.1.1.40 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › DUF3536 | 0.68 | 41.0 | 2.86e-01 | 70.1% | 20.0% |
| 3196366 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.68 | 52.0 | 3.75e-01 | 82.1% | 74.1% |
| 3225336 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.67 | 50.0 | 3.87e-01 | 80.6% | 44.1% |
| 3218903 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.66 | 54.0 | 3.87e-01 | 100.0% | 29.5% |
| 3609492 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.65 | 56.0 | 4.41e-01 | 95.5% | 47.1% |
| 3706065 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 51.0 | 4.10e-01 | 85.1% | 80.0% |
| 5044594 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.65 | 52.0 | 4.76e-01 | 88.1% | 84.4% |
| 3588455 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.64 | 45.0 | 4.49e-01 | 80.6% | 70.0% |
| 3813951 | 241.15.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N | 0.64 | 58.0 | 4.40e-01 | 100.0% | 72.3% |
| 3484246 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.63 | 56.0 | 3.48e-01 | 100.0% | 35.2% |
| 3740898 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.63 | 53.0 | 3.51e-01 | 95.5% | 51.5% |
| 4999510 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.63 | 43.0 | 4.00e-01 | 79.1% | 56.5% |
| 3704328 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.62 | 54.0 | 5.05e-01 | 97.0% | 78.3% |
| 1148074 | 3400.1.1.1 ↗ | a+b complex topology › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Filo_VP24 | 0.62 | 48.0 | 3.33e-01 | 83.6% | 52.3% |
| 3621390 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.62 | 52.0 | 3.51e-01 | 97.0% | 74.6% |
| 3969495 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.62 | 53.0 | 3.66e-01 | 98.5% | 72.4% |
| 3441723 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.62 | 51.0 | 3.42e-01 | 94.0% | 40.6% |
| 3827726 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.60 | 53.0 | 3.49e-01 | 100.0% | 38.6% |
| 4067273 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.60 | 52.0 | 3.88e-01 | 95.5% | 44.2% |
| 3229190 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.60 | 50.0 | 3.21e-01 | 97.0% | 40.0% |
| 3942181 | 6150.1.1.0 ↗ | a+b two layers › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 | 0.60 | 47.0 | 4.10e-01 | 86.6% | 64.8% |
| 3586827 | 274.1.1.25 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF | 0.60 | 47.0 | 3.90e-01 | 83.6% | 50.4% |
| 4994580 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.59 | 50.0 | 3.03e-01 | 94.0% | 92.2% |
| 3793430 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.59 | 44.0 | 3.91e-01 | 79.1% | 67.4% |
| 3238997 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.58 | 49.0 | 3.98e-01 | 95.5% | 94.0% |
| 3996551 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 43.0 | 3.94e-01 | 80.6% | 84.4% |
| 3520837 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 43.0 | 3.50e-01 | 82.1% | 55.6% |
| 3421682 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 48.0 | 3.16e-01 | 98.5% | 68.4% |
| 4197307 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.57 | 45.0 | 3.45e-01 | 88.1% | 49.1% |
| 3652003 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 49.0 | 3.16e-01 | 97.0% | 58.2% |
| 3684031 | 7512.1.1.1 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT | 0.56 | 44.0 | 2.93e-01 | 85.1% | 26.0% |
| 3629974 | 220.1.1.52 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C | 0.56 | 42.0 | 3.73e-01 | 82.1% | 75.0% |
| 847 | 9.1.1.20 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3255 | 0.54 | 47.0 | 3.77e-01 | 94.0% | 83.3% |
| 4011804 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.52 | 44.0 | 2.74e-01 | 100.0% | 41.9% |