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NC_028805.1__YP_009199064.1__AVV11_gp003__00003

Bact-Vir

NC_028805.1__YP_009199064.1__AVV11_gp003__00003

Identity

Accession:
NC_028805 ↗
Kingdom:
phage

Quality

70.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-79
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dqqA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 46.0 3.83e-01 89.6% 73.5%
2g80A02 1.10.720.60 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.57 43.0 4.14e-01 83.6% 100.0%
4iv6B01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.54 46.0 3.91e-01 98.5% 88.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027579 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.60 52.0 4.00e-01 98.5% 68.1%
4998819 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.59 38.0 3.08e-01 91.0% 34.6%
3200311 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.56 40.0 3.87e-01 82.1% 65.0%
3593910 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.54 41.0 3.09e-01 89.6% 66.0%
3989431 1075.3.1.3 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1+OppC_N 0.50 39.0 2.68e-01 88.1% 64.4%