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NC_028805.1__YP_009199085.1__AVV11_gp167__00024

Bact-Vir

Identity

Accession:: NC_028805 ↗
Kingdom:: phage

Quality

80.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jenstvirus› Brevibacillus_phage_Jenst

TaxID: 1691954

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 336-420

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ch7A00	1.10.287.950	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein	0.75	60.0	3.97e-01	83.5%	88.3%
4g6dB02	6.10.140.1800	Special › Helix non-globular › Helix Hairpins ›	0.75	48.0	4.99e-01	71.8%	69.1%
2nnwA02	1.10.287.4070	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.67	51.0	4.43e-01	81.2%	72.4%
4iloA00	1.10.287.1490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.65	55.0	3.87e-01	88.2%	33.9%
2ozbB01	1.10.287.4070	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.64	50.0	4.29e-01	82.4%	78.6%
2a6hF01	1.20.120.1810	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.64	47.0	3.75e-01	80.0%	45.4%
1wpaA01	6.10.140.340	Special › Helix non-globular › Helix Hairpins ›	0.61	43.0	4.09e-01	80.0%	62.6%
3ckdA02	1.20.58.360	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines	0.61	41.0	3.58e-01	78.8%	47.6%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3564696	4970.1.1.0 ↗	alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I	0.81	51.0	4.74e-01	71.8%	52.4%
3184698	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.74	56.0	5.48e-01	87.1%	73.3%
3712596	1075.1.2.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX	0.68	49.0	3.70e-01	75.3%	32.0%
3693145	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.67	51.0	3.76e-01	80.0%	44.6%
4971806	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.65	51.0	3.87e-01	84.7%	48.3%
3599894	3755.4.1.0 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain	0.62	56.0	4.48e-01	97.6%	53.8%
5012473	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.62	53.0	4.82e-01	90.6%	70.0%
5024245	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.59	49.0	4.47e-01	88.2%	68.2%
4165729	101.1.1.31 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4	0.59	43.0	3.41e-01	76.5%	50.3%
3584530	5054.1.1.9 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › PKD_channel	0.54	45.0	3.90e-01	92.9%	58.5%

D2 medium residues 1-36_55-150_199-217_237-280

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1bdfA01	3.30.1360.10	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit	0.62	31.0	4.06e-01	99.0%	84.9%
4ozjA00	3.30.70.120	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.62	29.0	3.80e-01	76.4%	79.8%
8ediA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.61	29.0	3.86e-01	92.8%	82.7%
3ahpA00	3.30.70.120	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.60	29.0	3.74e-01	77.4%	81.1%
6ue9L02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.58	29.0	3.58e-01	92.8%	74.6%
4noiA01	3.30.1360.10	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit	0.57	29.0	3.75e-01	82.6%	86.4%
3uebF00	3.30.300.100	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like	0.55	30.0	3.93e-01	83.6%	98.0%
1lp9E02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.55	23.0	3.34e-01	91.8%	87.5%
2wyhA05	2.60.40.2210	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.55	32.0	3.74e-01	81.5%	81.3%
1v8cA02	3.30.1370.80	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain	0.54	25.0	3.61e-01	81.0%	100.0%
3uc2A00	2.60.40.3340	Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426	0.54	29.0	3.48e-01	92.8%	77.4%
3lvtA03	2.60.40.2210	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	31.0	3.75e-01	93.3%	88.4%
2y8yA02	3.30.70.1210	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2	0.51	30.0	3.72e-01	77.4%	96.5%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5057186	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.66	30.0	4.25e-01	80.5%	90.0%
3667432	304.8.1.0 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like	0.63	31.0	4.22e-01	92.8%	93.7%
3599842	304.12.1.0 ↗	a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6	0.60	33.0	4.18e-01	81.5%	89.6%
4963976	331.6.1.1 ↗	a+b two layers › TBP-like › MoaD-related protein, C-terminal domain › MoaD-related protein, C-terminal domain › DUF1952	0.58	25.0	3.90e-01	79.5%	100.0%
4311943	1.1.7.89 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002	0.57	32.0	3.97e-01	86.2%	88.3%
4342449	305.1.1.1 ↗	a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L	0.56	31.0	3.80e-01	98.5%	84.2%
5043215	304.8.1.82 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325	0.54	28.0	3.37e-01	77.4%	73.8%
5039601	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.52	38.0	4.08e-01	74.9%	93.3%
4135761	305.1.1.0 ↗	a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase	0.52	31.0	3.80e-01	97.9%	94.2%
5078463	314.1.1.6 ↗	a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB	0.50	39.0	3.94e-01	96.9%	79.5%

D3 medium residues 37-54_151-198

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2x5rA01	3.30.470.40	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 ›	0.54	39.0	3.25e-01	98.5%	43.5%
4e1pA00	3.30.60.230	Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain	0.52	26.0	2.83e-01	92.4%	49.1%