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NC_028805.1__YP_009199138.1__AVV11_gp114__00077

Bact-Vir

NC_028805.1__YP_009199138.1__AVV11_gp114__00077

Identity

Accession:
NC_028805 ↗
Kingdom:
phage

Quality

81.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jenstvirus› Brevibacillus_phage_Jenst

TaxID: 1691954

Cluster

View cluster (41 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 68-206
PDB
Domain cluster: rep: MZ326863.1__QYW02339.1__CPT_Paku_045__00045__D5-122
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01464.26 best SLT 65.3 5.30e-18 77.0% 87.2%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c5fA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.90 75.0 6.95e-01 85.6% 98.2%
6cfcA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.85 69.0 6.48e-01 82.7% 89.4%
4hjzA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.85 77.0 6.84e-01 93.5% 93.4%
4yibA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.83 75.0 7.13e-01 92.8% 88.6%
1qsaA03 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.82 76.0 6.97e-01 96.4% 87.9%
3bkhA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.79 71.0 6.42e-01 95.0% 98.9%
153lA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.76 68.0 6.10e-01 93.5% 76.8%
3w6bB00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.75 71.0 6.88e-01 99.3% 95.4%
4qdnA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.70 56.0 6.02e-01 92.8% 97.5%
1xsfA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.70 45.0 4.98e-01 78.4% 81.5%
1tj7A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.70 32.0 4.40e-01 100.0% 84.5%
1dcnA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.69 31.0 4.31e-01 100.0% 83.3%
1hfxA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.67 52.0 5.57e-01 95.0% 92.7%
3fi7A01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.66 55.0 5.72e-01 92.1% 93.8%
1nxuA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.66 35.0 4.69e-01 100.0% 93.7%
4kt3A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.65 57.0 5.68e-01 94.2% 92.2%
4z3xA03 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.57 45.0 4.11e-01 99.3% 63.4%
1vbiA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.56 35.0 4.09e-01 100.0% 86.4%
1dgnA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.53 33.0 3.92e-01 71.9% 95.5%
1b25A02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.51 45.0 4.21e-01 100.0% 75.8%
4qqwA01 1.10.3210.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › 0.51 42.0 3.45e-01 87.1% 56.1%
1xrhD01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.51 34.0 3.97e-01 98.6% 92.2%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.51 45.0 4.16e-01 100.0% 98.9%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964630 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.90 84.0 7.81e-01 100.0% 81.7%
3945171 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.86 76.0 7.48e-01 91.4% 92.4%
4515466 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.86 77.0 6.96e-01 92.8% 95.6%
3971115 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.86 77.0 7.13e-01 93.5% 95.3%
5028353 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 77.0 6.89e-01 93.5% 93.9%
3978377 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.85 77.0 6.70e-01 94.2% 86.7%
3979308 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.84 76.0 6.89e-01 92.8% 93.7%
4164050 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.84 76.0 6.53e-01 94.2% 82.4%
4321901 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.84 76.0 6.81e-01 94.2% 91.4%
2393514 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.84 75.0 6.64e-01 93.5% 90.0%
3385979 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 74.0 6.58e-01 93.5% 78.9%
3944103 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 74.0 6.69e-01 93.5% 89.4%
3941811 235.1.1.32 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 0.82 76.0 7.00e-01 95.7% 87.6%
4031083 235.1.1.14 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transglycosylas 0.80 46.0 6.06e-01 77.0% 100.0%
3260862 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.80 57.0 6.40e-01 89.9% 92.7%
3969917 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.79 75.0 6.54e-01 100.0% 91.5%
3254511 235.1.1.1 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys 0.79 57.0 6.57e-01 89.9% 98.1%
3692876 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.79 74.0 6.70e-01 99.3% 98.3%
3205219 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.78 73.0 6.75e-01 97.8% 90.0%
3582448 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.78 67.0 6.96e-01 88.5% 96.2%
3839661 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.78 71.0 6.51e-01 94.2% 88.2%
3720940 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.78 73.0 6.70e-01 99.3% 88.0%
3884688 235.1.1.31 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › PF31087 0.77 68.0 6.25e-01 93.5% 80.6%
2647598 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.77 73.0 6.56e-01 100.0% 97.3%
4956469 4953.1.1.2 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C 0.72 33.0 4.42e-01 100.0% 80.0%
5025739 4953.1.1.2 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C 0.71 32.0 4.24e-01 100.0% 77.3%
3297516 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.70 32.0 4.04e-01 100.0% 70.6%
4036926 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.70 31.0 4.27e-01 100.0% 80.0%
4116531 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.67 32.0 4.39e-01 100.0% 86.7%
4666964 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.67 32.0 4.39e-01 100.0% 86.7%
3960956 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.66 54.0 5.84e-01 89.9% 100.0%
4307412 181.1.1.27 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › ATP-cone 0.64 32.0 4.09e-01 98.6% 80.0%
3877052 235.1.1.31 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › PF31087 0.64 57.0 5.25e-01 93.5% 78.2%
5045196 169.1.1.1 ↗ alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.54 46.0 3.37e-01 100.0% 33.4%
3963765 159.1.2.5 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 0.54 46.0 4.18e-01 93.5% 74.7%
3957221 141.1.1.0 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases 0.53 38.0 3.10e-01 74.1% 76.0%
3204146 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.52 39.0 3.40e-01 78.4% 87.9%
3604136 169.1.1.1 ↗ alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.52 47.0 3.37e-01 100.0% 37.1%
5024843 169.1.1.1 ↗ alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.51 45.0 3.32e-01 99.3% 53.6%
3248617 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.51 43.0 3.75e-01 95.7% 97.8%
4338520 169.1.1.1 ↗ alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.51 46.0 3.30e-01 100.0% 48.8%
3199068 109.4.1.681 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.50 38.0 2.82e-01 80.6% 82.2%