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NC_028805.1__YP_009199140.1__AVV11_gp112__00079

Bact-Vir

NC_028805.1__YP_009199140.1__AVV11_gp112__00079

Identity

Accession:
NC_028805 ↗
Kingdom:
phage

Quality

79.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-74
PDB
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.90 64.0 7.03e-01 74.3% 95.2%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.89 61.0 6.57e-01 70.3% 88.9%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.88 66.0 7.53e-01 83.8% 100.0%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.86 61.0 6.26e-01 78.4% 76.1%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.86 59.0 5.40e-01 71.6% 68.4%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.84 57.0 5.93e-01 70.3% 84.1%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.84 58.0 6.04e-01 73.0% 76.8%
3kbgA03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 60.0 6.86e-01 81.1% 100.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 57.0 6.03e-01 73.0% 83.3%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 55.0 6.11e-01 71.6% 94.9%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 54.0 6.12e-01 70.3% 96.4%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 56.0 5.06e-01 74.3% 63.3%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 53.0 5.71e-01 70.3% 96.9%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 55.0 5.90e-01 74.3% 89.2%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 55.0 5.73e-01 74.3% 91.2%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 54.0 5.95e-01 73.0% 100.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 57.0 5.76e-01 87.8% 79.5%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 53.0 5.64e-01 79.7% 82.8%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 53.0 5.76e-01 71.6% 88.3%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.76 58.0 5.27e-01 81.1% 62.2%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.75 52.0 5.68e-01 71.6% 98.3%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 53.0 5.93e-01 73.0% 100.0%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 52.0 5.57e-01 71.6% 100.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 52.0 5.40e-01 73.0% 97.1%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 54.0 5.33e-01 78.4% 77.2%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.72 62.0 6.15e-01 94.6% 87.0%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.71 50.0 4.51e-01 77.0% 53.9%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 53.0 5.71e-01 79.7% 100.0%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 55.0 5.32e-01 83.8% 84.5%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.70 52.0 3.64e-01 77.0% 39.3%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 50.0 5.00e-01 75.7% 93.3%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 47.0 5.08e-01 71.6% 98.4%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 4.65e-01 74.3% 86.7%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.67 50.0 5.04e-01 81.1% 97.4%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 50.0 5.24e-01 85.1% 89.4%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 51.0 5.09e-01 82.4% 89.5%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 4.67e-01 82.4% 84.4%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 48.0 4.04e-01 77.0% 48.8%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.66 46.0 4.11e-01 89.2% 49.6%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 47.0 3.82e-01 75.7% 44.7%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.64 55.0 4.20e-01 95.9% 88.6%
1wjsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 4.40e-01 89.2% 69.3%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.64 56.0 4.18e-01 98.6% 84.0%
2aj2A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.62 54.0 5.00e-01 98.6% 75.3%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.61 53.0 3.98e-01 93.2% 79.0%
1wjqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 55.0 5.45e-01 100.0% 97.4%
2rhiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 54.0 4.68e-01 100.0% 78.6%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 50.0 4.18e-01 91.9% 74.8%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 42.0 2.74e-01 75.7% 32.0%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 45.0 3.80e-01 86.5% 51.1%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 41.0 2.71e-01 75.7% 28.1%
4g9mB00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 41.0 3.41e-01 79.7% 98.6%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 37.0 3.29e-01 74.3% 70.3%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.52 36.0 3.47e-01 73.0% 97.6%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.51 39.0 3.77e-01 82.4% 93.9%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 38.0 2.62e-01 83.8% 96.1%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4640515 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.93 60.0 7.28e-01 81.1% 98.0%
4372288 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.90 61.0 6.84e-01 77.0% 86.7%
3821919 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.89 61.0 6.74e-01 71.6% 86.7%
4029082 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 57.0 6.96e-01 70.3% 100.0%
3486327 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 63.0 7.06e-01 93.2% 95.0%
3169607 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.85 60.0 6.01e-01 79.7% 72.0%
3675511 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.85 71.0 6.92e-01 95.9% 81.2%
3456496 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.84 71.0 5.95e-01 95.9% 56.5%
3660923 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 62.0 6.44e-01 94.6% 81.4%
3586487 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 57.0 5.44e-01 70.3% 62.4%
3671986 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.84 62.0 6.45e-01 79.7% 81.4%
4000280 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 60.0 6.88e-01 79.7% 100.0%
4056584 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.83 58.0 5.69e-01 73.0% 78.8%
4954284 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 54.0 5.90e-01 70.3% 81.7%
3222051 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 56.0 5.99e-01 70.3% 81.5%
4629022 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.82 61.0 6.29e-01 78.4% 81.4%
4881976 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.82 59.0 6.00e-01 89.2% 75.7%
3933047 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.81 57.0 4.33e-01 73.0% 36.9%
3398093 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.81 59.0 6.53e-01 83.8% 93.3%
4226934 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.80 55.0 5.87e-01 71.6% 93.8%
3240406 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.80 65.0 5.54e-01 86.5% 96.5%
3244497 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.80 56.0 4.35e-01 73.0% 38.7%
4943876 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.79 61.0 5.57e-01 81.1% 67.4%
4031435 4.1.1.143 beta barrels › SH3 › SH3 › SH3 › TagH_SH3-like 0.79 55.0 5.82e-01 71.6% 93.8%
5065841 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.79 61.0 5.84e-01 81.1% 73.8%
5064457 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.79 52.0 5.37e-01 70.3% 71.4%
3620094 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 55.0 6.28e-01 81.1% 96.4%
3927663 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 55.0 5.82e-01 77.0% 81.5%
4547820 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 66.0 5.74e-01 97.3% 61.9%
2575643 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.78 53.0 5.46e-01 71.6% 73.9%
3501560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 68.0 6.28e-01 91.9% 91.1%
5033242 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.78 60.0 5.72e-01 81.1% 71.8%
3519861 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 53.0 5.83e-01 70.3% 93.3%
3883159 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 61.0 5.72e-01 90.5% 68.9%
5046193 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.77 59.0 5.53e-01 81.1% 67.8%
4253108 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.77 59.0 5.58e-01 81.1% 69.3%
4656461 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.77 53.0 5.85e-01 71.6% 93.3%
4885908 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.77 59.0 5.34e-01 81.1% 65.3%
4947175 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.77 57.0 5.36e-01 79.7% 64.4%
3903323 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.76 54.0 5.46e-01 74.3% 80.0%
3996278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 58.0 4.82e-01 79.7% 62.5%
3198731 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.76 65.0 5.24e-01 90.5% 80.0%
3715776 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 56.0 5.95e-01 89.2% 87.7%
4505797 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 59.0 6.28e-01 83.8% 100.0%
3765289 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 59.0 5.54e-01 94.6% 68.9%
3561462 148.1.3.384 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › SH3_2 0.75 56.0 4.19e-01 78.4% 37.1%
4261362 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 61.0 6.24e-01 86.5% 92.9%
4185009 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 59.0 6.23e-01 83.8% 100.0%
4151014 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 56.0 6.17e-01 81.1% 98.3%
5038850 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.74 56.0 5.25e-01 79.7% 65.6%
3933788 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 56.0 6.22e-01 79.7% 98.3%
3599257 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 57.0 6.01e-01 81.1% 100.0%
3523046 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 55.0 5.22e-01 78.4% 69.4%
3539094 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 60.0 5.89e-01 89.2% 98.8%
4974211 4.1.1.485 beta barrels › SH3 › SH3 › SH3 › DUF6897 0.73 50.0 5.43e-01 70.3% 98.3%
3302817 4.1.1.362 beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2, KOW7_SPT5 0.73 62.0 5.42e-01 91.9% 99.1%
4020558 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 54.0 5.73e-01 78.4% 96.9%
4342110 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 59.0 5.98e-01 87.8% 89.0%
4476045 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 56.0 5.82e-01 83.8% 94.3%
4104821 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 58.0 5.86e-01 89.2% 86.7%
4940673 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 53.0 5.84e-01 85.1% 96.7%
4216845 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 58.0 5.89e-01 87.8% 90.4%
4124780 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 58.0 5.89e-01 87.8% 93.2%
3409299 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.71 63.0 6.15e-01 100.0% 88.7%
3883895 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 59.0 5.34e-01 90.5% 81.0%
3976863 4.11.1.3 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.71 51.0 4.60e-01 93.2% 54.3%
3500448 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 55.0 5.82e-01 82.4% 95.4%
3942297 4.11.1.3 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.70 51.0 4.44e-01 93.2% 50.4%
4527355 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 57.0 5.90e-01 89.2% 94.2%
4660084 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 56.0 5.84e-01 89.2% 94.2%
1391581 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.69 48.0 4.43e-01 71.6% 59.1%
3576438 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 59.0 5.48e-01 91.9% 75.6%
4396355 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 55.0 5.29e-01 87.8% 87.1%
4429329 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 53.0 5.61e-01 85.1% 95.4%
4525683 4.11.1.3 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.68 49.0 4.23e-01 93.2% 48.3%
4299932 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 54.0 5.71e-01 90.5% 100.0%
4302032 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 54.0 5.72e-01 89.2% 98.5%
4002498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 54.0 4.98e-01 86.5% 83.2%
4985969 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 51.0 5.63e-01 85.1% 100.0%
4069793 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 54.0 5.52e-01 87.8% 92.9%
4264671 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 58.0 5.71e-01 97.3% 95.0%
3604145 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 49.0 5.38e-01 89.2% 100.0%
4118226 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 52.0 5.40e-01 93.2% 94.3%
4973749 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 53.0 5.46e-01 94.6% 95.7%
5001903 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 52.0 5.37e-01 93.2% 98.6%
4995699 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 46.0 4.75e-01 89.2% 94.3%