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NC_028805.1__YP_009199156.1__AVV11_gp096__00095

Bact-Vir

NC_028805.1__YP_009199156.1__AVV11_gp096__00095

Identity

Accession:
NC_028805 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jenstvirus› Brevibacillus_phage_Jenst

TaxID: 1691954

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-40_53-86
PDB
Domain cluster: rep: IMGVR_UViG_3300001322_000007-3300001322-A2665W6_1007254__D6-40_53-84
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tu3B01 3.30.720.80 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.71 55.0 5.36e-01 100.0% 76.3%
6qpwA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 47.0 3.67e-01 97.2% 33.3%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 5.14e-01 95.8% 100.0%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 49.0 5.29e-01 94.4% 96.6%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 49.0 5.36e-01 95.8% 100.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.61e-01 88.7% 82.5%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 47.0 4.96e-01 95.8% 90.6%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 47.0 5.12e-01 93.0% 100.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.30e-01 97.2% 69.9%
1a2pA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.63 48.0 4.15e-01 88.7% 53.7%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 47.0 4.36e-01 97.2% 64.1%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 48.0 4.92e-01 100.0% 92.4%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 45.0 4.85e-01 95.8% 96.6%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 54.0 4.39e-01 100.0% 84.7%
4dooA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.61 49.0 3.93e-01 90.1% 67.8%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 46.0 4.46e-01 95.8% 73.4%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 43.0 4.68e-01 95.8% 96.5%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 46.0 4.83e-01 84.5% 89.4%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.59 39.0 4.29e-01 93.0% 92.3%
1zy9A03 2.60.40.2760 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 36.0 4.28e-01 78.9% 100.0%
3ecqA01 2.60.120.870 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.72e-01 100.0% 69.9%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 47.0 3.61e-01 91.5% 81.6%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.76e-01 100.0% 74.2%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 40.0 4.16e-01 78.9% 79.1%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.56 45.0 4.06e-01 93.0% 78.5%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 49.0 4.73e-01 100.0% 91.4%
4mp8A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.55 47.0 3.62e-01 95.8% 52.2%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 47.0 3.05e-01 98.6% 90.4%
4lg9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.90e-01 93.0% 23.4%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.54 43.0 3.24e-01 85.9% 90.6%
2pgwA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 48.0 3.78e-01 100.0% 98.7%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 42.0 4.17e-01 93.0% 82.7%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 46.0 3.96e-01 97.2% 82.1%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 46.0 3.76e-01 100.0% 92.7%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.52 45.0 3.40e-01 100.0% 72.5%
1fhvA02 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 44.0 3.73e-01 100.0% 96.0%
3op2A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 44.0 3.65e-01 100.0% 94.7%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3511200 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.71 52.0 4.88e-01 94.4% 63.5%
3278853 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 50.0 5.17e-01 95.8% 84.6%
3254426 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.66 49.0 3.88e-01 87.3% 40.7%
3479037 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 4.94e-01 98.6% 75.0%
3482646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 3.68e-01 98.6% 30.0%
3452325 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 55.0 3.94e-01 97.2% 33.0%
3668713 868.1.1.3 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.64 57.0 4.03e-01 100.0% 32.7%
3934527 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 46.0 5.08e-01 94.4% 100.0%
158943 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 48.0 4.63e-01 98.6% 75.9%
3743878 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.61 51.0 3.17e-01 93.0% 26.7%
3522461 4215.1.1.0 ↗ alpha arrays › SOCS box-like › SOCS box-like › SOCS box-like 0.61 54.0 3.36e-01 100.0% 62.5%
3601976 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 50.0 3.13e-01 87.3% 20.5%
3514867 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 46.0 4.54e-01 98.6% 78.7%
3691522 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 51.0 3.23e-01 94.4% 29.4%
4549418 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 52.0 3.27e-01 100.0% 64.1%
3595303 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 50.0 3.02e-01 94.4% 24.2%
3891010 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.58e-01 90.1% 93.3%
4030728 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.58 50.0 3.14e-01 94.4% 20.8%
3709124 5.1.5.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › RAB3GAP2_N 0.58 51.0 3.10e-01 100.0% 72.7%
3597435 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 49.0 3.08e-01 94.4% 31.5%
3505046 5.1.2.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.56 45.0 3.75e-01 93.0% 52.2%
3718642 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 46.0 2.80e-01 93.0% 17.1%
3728449 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 50.0 3.11e-01 100.0% 69.7%
4344924 868.1.1.3 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.56 49.0 3.52e-01 100.0% 40.5%
3308887 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.56 50.0 3.09e-01 100.0% 33.7%
2833343 3982.1.1.1 ↗ a+b complex topology › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › DUF2511 0.56 45.0 4.17e-01 91.5% 89.5%
3713817 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 47.0 2.93e-01 94.4% 21.5%
3595133 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 3.08e-01 98.6% 45.8%
3316054 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 2.77e-01 91.5% 26.1%
3579710 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.54 41.0 3.62e-01 81.7% 72.4%
4555701 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 47.0 2.94e-01 100.0% 71.3%
3739946 5.1.4.265 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR3_1st 0.54 46.0 2.89e-01 95.8% 26.0%
4243428 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 47.0 3.06e-01 100.0% 74.7%
3569201 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 46.0 2.90e-01 95.8% 27.6%
4243231 5.1.4.172 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_CAF1B_HIR1 0.53 47.0 2.78e-01 100.0% 25.1%
4381762 558.1.1.26 ↗ alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › WD40 0.53 46.0 2.79e-01 100.0% 58.8%
2726885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 46.0 3.99e-01 98.6% 95.6%
None — 0.53 47.0 2.97e-01 100.0% 64.2%
4027489 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 46.0 2.87e-01 100.0% 92.0%
4235664 4139.1.1.1 ↗ a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like › AMMECR1 0.53 43.0 3.54e-01 91.5% 66.7%
3392393 5.1.4.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1 0.52 46.0 2.92e-01 98.6% 28.1%
3923813 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 40.0 4.17e-01 97.2% 92.3%
5036669 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.52 45.0 4.03e-01 97.2% 83.0%
3260298 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 45.0 2.82e-01 100.0% 87.8%
3670270 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 43.0 2.84e-01 91.5% 57.7%
3397300 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 45.0 2.94e-01 100.0% 71.7%
3399557 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 43.0 4.35e-01 100.0% 100.0%