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NC_028805.1__YP_009199171.1__AVV11_gp081__00110

Bact-Vir

NC_028805.1__YP_009199171.1__AVV11_gp081__00110

Identity

Accession:
NC_028805 ↗
Kingdom:
phage

Quality

78.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jenstvirus› Brevibacillus_phage_Jenst

TaxID: 1691954

Cluster

View cluster (15 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-96
PDB
Domain cluster: rep: gwa1_scaffold_1_prodigal-single.1__X__X__00024__D75-147
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.73 40.0 4.04e-01 100.0% 53.1%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.72 44.0 4.80e-01 100.0% 75.3%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 38.0 4.42e-01 95.8% 74.2%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 38.0 4.57e-01 93.7% 82.3%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.64 40.0 3.66e-01 100.0% 48.4%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 36.0 3.24e-01 100.0% 41.2%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 40.0 3.89e-01 100.0% 58.7%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 37.0 3.30e-01 100.0% 42.0%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 37.0 3.17e-01 100.0% 38.3%
2fr5A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.60 41.0 3.72e-01 70.5% 82.4%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 38.0 3.55e-01 100.0% 52.6%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.60 36.0 4.28e-01 100.0% 89.2%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 37.0 2.95e-01 100.0% 30.9%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 36.0 3.25e-01 100.0% 43.0%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 35.0 2.97e-01 100.0% 35.2%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 36.0 3.19e-01 100.0% 41.5%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 40.0 3.73e-01 100.0% 57.1%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.57 39.0 3.97e-01 95.8% 71.3%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 35.0 3.10e-01 100.0% 40.6%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 35.0 3.18e-01 100.0% 43.0%
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.56 27.0 3.62e-01 94.7% 91.3%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 35.0 3.47e-01 97.9% 57.7%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 35.0 2.80e-01 100.0% 29.4%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 39.0 3.58e-01 71.6% 83.5%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 33.0 2.83e-01 100.0% 33.3%
5kycB02 2.20.210.10 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › ubp-family deubiquitinating enzyme superfamily 0.55 32.0 3.93e-01 97.9% 100.0%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.73e-01 100.0% 75.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 44.0 3.63e-01 91.6% 99.4%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.52 39.0 3.91e-01 100.0% 76.2%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.52 37.0 3.59e-01 74.7% 80.2%
4e80C01 1.10.1410.10 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.51 43.0 3.41e-01 94.7% 80.5%
3ghgB02 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.51 36.0 2.75e-01 75.8% 93.1%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 43.0 3.52e-01 96.8% 91.0%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.51 26.0 2.72e-01 82.1% 48.9%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959440 4.1.1.180 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3107 0.75 50.0 5.79e-01 94.7% 100.0%
3988748 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.75 40.0 3.40e-01 100.0% 34.5%
184690 11.22.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Dispersin › Dispersin › CellEnv_BiogenAssoc 0.73 40.0 4.04e-01 100.0% 53.1%
3972526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 49.0 5.58e-01 96.8% 94.3%
3501768 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.72 41.0 4.76e-01 100.0% 77.1%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.72 44.0 4.88e-01 100.0% 77.3%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.71 50.0 5.66e-01 95.8% 100.0%
5027750 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 40.0 4.96e-01 100.0% 100.0%
4432457 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 40.0 4.51e-01 98.9% 77.1%
3954254 4.1.1.387 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c 0.68 41.0 4.79e-01 98.9% 87.7%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.67 41.0 4.81e-01 98.9% 89.2%
5050320 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.66 39.0 4.34e-01 97.9% 74.7%
4397568 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.66 39.0 4.00e-01 100.0% 61.1%
4971470 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 39.0 4.30e-01 97.9% 74.7%
3972550 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 40.0 3.96e-01 100.0% 60.0%
5046850 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.63 38.0 3.88e-01 98.9% 62.2%
4942796 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.63 40.0 3.84e-01 100.0% 55.5%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.62 34.0 4.34e-01 97.9% 100.0%
4348482 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.62 56.0 4.61e-01 100.0% 81.7%
4345869 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.61 39.0 3.76e-01 100.0% 55.5%
3600513 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.61 39.0 3.65e-01 100.0% 50.8%
4131213 4004.1.1.13 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › PF31116 0.61 54.0 4.55e-01 100.0% 89.7%
3266139 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.60 41.0 3.70e-01 70.5% 79.3%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 41.0 4.41e-01 97.9% 83.7%
3528111 10.21.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 0.60 38.0 3.50e-01 100.0% 48.8%
5059830 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.58 41.0 4.23e-01 100.0% 76.7%
4321663 4004.1.1.10 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › PI3K_1B_p101 0.57 51.0 4.05e-01 100.0% 100.0%
4486024 4004.1.1.10 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › PI3K_1B_p101 0.57 50.0 4.09e-01 100.0% 94.1%
5018190 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.56 34.0 2.87e-01 100.0% 35.0%
4606765 1.1.7.91 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.56 37.0 3.55e-01 100.0% 58.2%
3478944 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.56 40.0 3.94e-01 100.0% 68.6%
5021613 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 43.0 3.84e-01 100.0% 57.8%
5083132 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 33.0 3.44e-01 72.6% 63.3%
5042330 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.55 36.0 4.06e-01 86.3% 90.0%
3517362 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.54 37.0 3.33e-01 100.0% 47.2%
1678258 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.54 37.0 3.42e-01 70.5% 87.3%
3517374 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.54 38.0 2.84e-01 73.7% 61.6%
4636302 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 40.0 3.76e-01 100.0% 65.2%
3474250 3369.1.1.0 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 0.53 47.0 3.78e-01 100.0% 78.4%
3990594 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.52 36.0 2.82e-01 71.6% 68.4%
3314684 10.10.1.5 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › DUF7755 0.52 38.0 3.21e-01 100.0% 46.5%
4502283 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.52 36.0 2.86e-01 72.6% 72.0%
3411079 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.52 47.0 3.79e-01 100.0% 76.1%
3593943 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.51 40.0 2.59e-01 100.0% 16.1%
3230518 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.51 38.0 3.30e-01 100.0% 49.7%
7384 219.1.1.21 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.51 43.0 3.52e-01 96.8% 91.0%
4948543 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.50 34.0 3.48e-01 70.5% 82.1%
4257482 1.1.5.9 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.50 36.0 2.84e-01 76.8% 84.2%