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NC_028805.1__YP_009199185.1__AVV11_gp067__00124

Bact-Vir

NC_028805.1__YP_009199185.1__AVV11_gp067__00124

Identity

Accession:
NC_028805 ↗
Kingdom:
phage

Quality

75.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jenstvirus› Brevibacillus_phage_Jenst

TaxID: 1691954

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 42.0 2.54e-01 70.2% 27.3%
4j80A03 2.60.260.20 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain 0.61 53.0 4.47e-01 100.0% 60.6%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.59 43.0 3.59e-01 100.0% 43.3%
2ix5A02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.59 43.0 3.69e-01 84.2% 79.4%
4euuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 43.0 3.75e-01 78.9% 96.6%
1yhpA02 2.60.40.1720 Mainly Beta › Sandwich › Immunoglobulin-like › Calcium-dependent cell adhesion molecule-1 0.58 42.0 3.37e-01 78.9% 68.3%
2q2gB02 2.60.260.20 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain 0.56 47.0 4.30e-01 100.0% 78.5%
2vseA05 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 40.0 3.06e-01 78.9% 59.9%
6wy9B02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.55 40.0 3.59e-01 86.0% 80.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 4.05e-01 89.5% 82.7%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 43.0 3.79e-01 94.7% 98.9%
4x28C02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.54 38.0 3.41e-01 84.2% 77.2%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 38.0 2.94e-01 78.9% 62.2%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 2.93e-01 91.2% 39.8%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.51 43.0 3.85e-01 98.2% 86.0%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.51 40.0 3.30e-01 100.0% 45.3%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.50 39.0 3.53e-01 100.0% 89.7%
6j5tB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 37.0 3.01e-01 82.5% 60.8%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5046929 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.88 61.0 6.46e-01 82.5% 82.0%
3343242 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.88 58.0 6.78e-01 71.9% 97.5%
5034626 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.81 54.0 6.08e-01 71.9% 97.5%
4968628 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 54.0 6.29e-01 70.2% 100.0%
3414868 375.3.1.1 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-DNL 0.79 56.0 4.88e-01 75.4% 52.9%
3599921 375.3.1.0 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger 0.74 51.0 4.98e-01 73.7% 85.9%
3405175 67.1.1.0 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain 0.72 64.0 5.72e-01 100.0% 71.2%
3832396 375.1.1.134 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Cys_rich_CPXG 0.68 56.0 5.03e-01 100.0% 66.3%
3236061 67.1.1.0 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain 0.66 53.0 5.05e-01 100.0% 75.7%
3340753 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 56.0 4.98e-01 100.0% 67.1%
3588046 304.55.1.14 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.63 43.0 2.84e-01 71.9% 55.8%
3838372 67.1.1.1 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.58 48.0 4.63e-01 100.0% 85.7%
3266721 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 4.40e-01 100.0% 86.2%
4000391 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 42.0 2.68e-01 86.0% 27.2%
3252890 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 4.11e-01 100.0% 91.3%
1933605 2.16.1.1 ↗ beta barrels › OB-fold › EutN/CcmL-like › EutN/CcmL-like › EutN_CcmL 0.51 43.0 3.85e-01 98.2% 86.0%
4253165 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.51 42.0 3.28e-01 98.2% 42.1%
4976340 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.51 43.0 3.41e-01 100.0% 79.2%
3736088 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 41.0 3.51e-01 98.2% 90.5%