←Back to structures

NC_028805.1__YP_009199193.1__AVV11_gp059__00132

Bact-Vir

NC_028805.1__YP_009199193.1__AVV11_gp059__00132

Identity

Accession:
NC_028805 ↗
Kingdom:
phage

Quality

74.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jenstvirus› Brevibacillus_phage_Jenst

TaxID: 1691954

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-41
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 47.0 3.30e-01 90.2% 43.2%
4l8nA03 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 45.0 3.16e-01 90.2% 71.3%
3w0fA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 37.0 2.62e-01 73.2% 19.1%
1b63A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.57 42.0 2.84e-01 92.7% 58.8%
1pguA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 46.0 2.82e-01 100.0% 25.3%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.57 43.0 4.21e-01 100.0% 73.3%
2yfsA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 41.0 2.44e-01 90.2% 34.9%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 39.0 3.61e-01 73.2% 52.5%
1s3lA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 43.0 3.06e-01 97.6% 69.1%
6x4tA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 3.46e-01 87.8% 77.6%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.56 40.0 3.31e-01 87.8% 55.8%
5lznA00 3.10.20.360 Alpha Beta › Roll › Ubiquitin-like (UB roll) › CKK domain 0.55 38.0 2.94e-01 75.6% 59.5%
2b0aA00 3.50.30.50 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Putative cyclase 0.55 41.0 2.74e-01 85.4% 74.2%
2c7yA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 43.0 2.59e-01 100.0% 92.3%
3lxuX01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.54 37.0 2.28e-01 75.6% 9.3%
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.54 38.0 3.87e-01 70.7% 95.1%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 3.20e-01 70.7% 54.2%
1ggpA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.52 40.0 2.90e-01 97.6% 36.2%
1uyjA01 3.30.360.60 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › 0.52 36.0 3.11e-01 100.0% 40.2%
4hpqB00 2.60.270.60 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Autophagy-related protein 31 0.52 35.0 2.72e-01 75.6% 27.0%
3bvxA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 37.0 2.78e-01 92.7% 54.4%
6nrzA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 41.0 2.51e-01 100.0% 82.3%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 35.0 2.90e-01 75.6% 64.9%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 37.0 2.55e-01 87.8% 85.7%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5044742 375.1.1.95 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_13 0.61 43.0 3.77e-01 75.6% 66.2%
3183994 3385.1.1.2 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 › PF27986 0.61 44.0 3.60e-01 80.5% 45.2%
3815492 2003.1.5.121 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF1442 0.61 49.0 3.20e-01 97.6% 46.2%
3186226 7527.1.1.1 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE 0.60 42.0 2.49e-01 75.6% 54.0%
4944757 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 41.0 4.08e-01 75.6% 71.1%
3424086 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.59 47.0 3.11e-01 90.2% 45.1%
3713348 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 40.0 3.53e-01 70.7% 79.7%
3619396 2004.1.1.171 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Smg8_Smg9 0.59 40.0 2.39e-01 70.7% 23.5%
3454406 375.1.1.69 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 0.57 38.0 3.70e-01 70.7% 60.0%
5028378 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 38.0 3.79e-01 75.6% 73.3%
3998976 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.56 38.0 3.78e-01 70.7% 64.4%
5065631 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.56 46.0 3.99e-01 95.1% 73.8%
5018480 1104.1.1.0 ↗ a+b complex topology › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain 0.55 41.0 2.80e-01 80.5% 36.1%
4962338 375.1.1.234 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_PaaD 0.55 37.0 3.80e-01 73.2% 72.5%
3929586 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.54 40.0 3.90e-01 85.4% 70.0%
3646061 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.54 41.0 3.03e-01 100.0% 27.3%
4968628 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 36.0 3.63e-01 73.2% 70.0%
3493806 2484.1.1.15 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 0.53 37.0 2.29e-01 80.5% 46.0%
3505640 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.53 35.0 3.17e-01 70.7% 56.7%
3585925 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 41.0 2.79e-01 100.0% 21.8%
3274193 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 42.0 2.28e-01 97.6% 9.5%
3597339 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 42.0 2.68e-01 100.0% 51.2%
5005974 304.51.1.6 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cmr3 0.52 36.0 2.36e-01 78.0% 33.2%
3262894 59.1.3.1 ↗ beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_pol_I_A49 0.52 38.0 3.07e-01 90.2% 86.7%
5044393 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 36.0 3.28e-01 73.2% 50.0%