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NC_028805.1__YP_009199197.1__AVV11_gp055__00136
Bact-VirNC_028805.1__YP_009199197.1__AVV11_gp055__00136
Identity
- Accession:
- NC_028805 ↗
- Kingdom:
- phage
Quality
80.8
mean pLDDT
Taxonomy
TaxID: 1691954
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-94
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kjxD01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.70 | 35.0 | 4.17e-01 | 95.7% | 72.1% |
| 4dq5B00 | 1.10.530.50 | Mainly Alpha › Orthogonal Bundle › Lysozyme › Peptidase U40 | 0.66 | 50.0 | 4.12e-01 | 78.7% | 48.1% |
| 2oezA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.66 | 54.0 | 4.55e-01 | 90.4% | 100.0% |
| 1vpwA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.65 | 32.0 | 3.91e-01 | 95.7% | 75.4% |
| 7wf8B01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.62 | 54.0 | 5.04e-01 | 100.0% | 77.7% |
| 1aipH03 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.60 | 31.0 | 4.00e-01 | 87.2% | 88.5% |
| 2ktmA00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.60 | 36.0 | 4.11e-01 | 98.9% | 82.4% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.59 | 36.0 | 3.32e-01 | 96.8% | 48.7% |
| 3c4wB01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.58 | 49.0 | 3.96e-01 | 100.0% | 46.7% |
| 3i7aA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.56 | 48.0 | 3.56e-01 | 100.0% | 68.1% |
| 1hr7C02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 39.0 | 3.05e-01 | 75.5% | 85.8% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.55 | 47.0 | 4.26e-01 | 96.8% | 93.3% |
| 1ywfA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 41.0 | 3.09e-01 | 80.9% | 62.2% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 32.0 | 3.11e-01 | 95.7% | 52.8% |
| 1oe8A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 37.0 | 3.42e-01 | 72.3% | 66.1% |
| 6xz3A01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.53 | 48.0 | 4.48e-01 | 100.0% | 94.9% |
| 3ic9A02 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.52 | 36.0 | 4.16e-01 | 100.0% | 97.1% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.52 | 39.0 | 4.05e-01 | 79.8% | 95.5% |
| 2b8iA00 | 1.20.1280.100 | Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain | 0.52 | 36.0 | 3.88e-01 | 79.8% | 87.0% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.52 | 36.0 | 3.93e-01 | 79.8% | 88.5% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.52 | 36.0 | 3.64e-01 | 72.3% | 85.6% |
| 3k1hA00 | 3.30.1120.180 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 | 0.52 | 42.0 | 4.03e-01 | 92.6% | 91.3% |
| 5cl3A00 | 1.25.10.90 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › | 0.52 | 38.0 | 2.89e-01 | 77.7% | 50.6% |
| 3o10C00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.52 | 46.0 | 4.06e-01 | 98.9% | 95.6% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.52 | 36.0 | 3.96e-01 | 100.0% | 88.3% |
| 4pt1B00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.52 | 42.0 | 3.84e-01 | 90.4% | 93.8% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 36.0 | 3.66e-01 | 94.7% | 75.6% |
| 1aj3A00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 35.0 | 3.49e-01 | 70.2% | 92.9% |
| 2l81A00 | 1.20.120.830 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Serine-rich domain | 0.50 | 44.0 | 3.63e-01 | 100.0% | 84.1% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4984959 | 3758.1.1.113 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Rad50_zn_hook | 0.71 | 41.0 | 2.78e-01 | 96.8% | 16.1% |
| 4944710 | 604.5.1.82 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TrkA_C | 0.65 | 37.0 | 3.71e-01 | 100.0% | 54.7% |
| 3237210 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.65 | 37.0 | 2.77e-01 | 98.9% | 24.1% |
| 4972595 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.63 | 50.0 | 4.90e-01 | 87.2% | 98.1% |
| 3945031 | 5086.1.1.86 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YBHG | 0.61 | 37.0 | 3.35e-01 | 100.0% | 44.6% |
| 3998888 | 3562.1.1.7 ↗ | alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › ERMP1-TM | 0.60 | 43.0 | 3.59e-01 | 75.5% | 54.7% |
| 4173843 | 532.2.1.1 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ | 0.59 | 44.0 | 4.24e-01 | 98.9% | 68.2% |
| 3441543 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.59 | 37.0 | 3.51e-01 | 96.8% | 53.6% |
| 4026671 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.58 | 35.0 | 3.32e-01 | 96.8% | 50.4% |
| 4134938 | 601.3.1.14 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PF27870 | 0.57 | 49.0 | 4.63e-01 | 95.7% | 89.6% |
| 4683334 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.56 | 37.0 | 3.47e-01 | 95.7% | 53.3% |
| 3599426 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.56 | 46.0 | 3.42e-01 | 92.6% | 49.4% |
| 4275897 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.55 | 43.0 | 3.70e-01 | 87.2% | 52.1% |
| 3969675 | 532.2.1.1 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ | 0.54 | 42.0 | 3.99e-01 | 95.7% | 70.0% |
| 4961494 | 5069.1.1.20 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B_N_2 | 0.54 | 49.0 | 3.43e-01 | 100.0% | 36.0% |
| 3675439 | 5059.1.1.52 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › PAP2 | 0.54 | 46.0 | 4.12e-01 | 92.6% | 93.1% |
| 3928979 | 4336.2.1.0 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 | 0.54 | 46.0 | 4.12e-01 | 95.7% | 83.0% |
| 3637359 | 604.10.1.7 ↗ | alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac › DUF202 | 0.54 | 33.0 | 3.28e-01 | 95.7% | 58.0% |
| 4978525 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.54 | 42.0 | 3.07e-01 | 97.9% | 30.6% |
| 5050395 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.54 | 39.0 | 4.11e-01 | 75.5% | 95.2% |
| 3262164 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.53 | 42.0 | 3.06e-01 | 96.8% | 30.4% |
| 3807227 | 105.1.1.0 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain | 0.53 | 37.0 | 3.70e-01 | 100.0% | 69.0% |
| 351198 | 109.1.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C | 0.52 | 38.0 | 3.32e-01 | 77.7% | 81.1% |
| 4033628 | 603.1.1.29 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF1361 | 0.52 | 35.0 | 2.98e-01 | 71.3% | 82.3% |
| 3483986 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 35.0 | 3.55e-01 | 71.3% | 93.7% |
| 4947640 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.51 | 40.0 | 2.98e-01 | 97.9% | 31.4% |
| 5001661 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.51 | 44.0 | 4.03e-01 | 100.0% | 88.5% |
| 5009449 | 5069.1.1.20 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B_N_2 | 0.51 | 44.0 | 3.22e-01 | 100.0% | 58.2% |
| 3240466 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 36.0 | 3.61e-01 | 72.3% | 90.5% |
| 3944886 | 101.1.4.2 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI | 0.50 | 32.0 | 3.49e-01 | 74.5% | 80.0% |
| 3510214 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.50 | 40.0 | 3.21e-01 | 88.3% | 66.5% |