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NC_028805.1__YP_009199234.1__AVV11_gp018__00173

Bact-Vir

NC_028805.1__YP_009199234.1__AVV11_gp018__00173

Identity

Accession:
NC_028805 ↗
Kingdom:
phage

Quality

91.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jenstvirus› Brevibacillus_phage_Jenst

TaxID: 1691954

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-125
PDB
Domain cluster: rep: LR215720.1__VEV88379.1__X__00024__D3-98
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l5iA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.76 34.0 4.05e-01 91.9% 60.2%
1ex0A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 39.0 4.06e-01 91.1% 61.4%
1l9nA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 38.0 3.95e-01 90.3% 60.5%
2je8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 35.0 3.80e-01 90.3% 62.7%
5wm1A05 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.63 39.0 4.04e-01 91.1% 65.8%
4gioA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 31.0 3.50e-01 89.5% 60.4%
5dmyA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 35.0 3.61e-01 90.3% 57.0%
7uzsX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 36.0 3.73e-01 88.7% 61.7%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 30.0 3.24e-01 86.3% 56.0%
1xf1A03 2.60.40.1710 Mainly Beta › Sandwich › Immunoglobulin-like › Subtilisin-like superfamily 0.57 36.0 3.53e-01 89.5% 58.8%
4dipH00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 39.0 3.97e-01 87.9% 73.9%
6i7sG01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.55 46.0 3.69e-01 91.9% 91.4%
5jp0A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 32.0 3.21e-01 86.3% 58.1%
1t16A00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.52 44.0 3.02e-01 91.1% 86.9%
1fm4A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 36.0 3.35e-01 71.8% 69.2%
4hwxA00 3.30.350.10 Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like 0.50 34.0 3.51e-01 87.1% 73.7%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5012930 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.72 32.0 3.81e-01 87.9% 60.0%
4948954 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 45.0 4.63e-01 93.5% 68.1%
3858827 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.68 29.0 3.44e-01 93.5% 55.6%
4456175 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.66 41.0 3.40e-01 96.8% 35.0%
4947556 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 38.0 3.60e-01 89.5% 46.7%
3410335 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 30.0 3.42e-01 87.1% 56.8%
3418391 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.64 39.0 3.96e-01 89.5% 60.8%
3818973 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.63 39.0 3.89e-01 90.3% 59.2%
3584645 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 35.0 3.63e-01 88.7% 61.7%
4581678 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 37.0 3.41e-01 91.9% 51.9%
3416828 10.32.1.188 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TMEM181_GOLD 0.56 35.0 3.34e-01 90.3% 52.4%
3499905 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 3.54e-01 90.3% 56.1%
3841963 11.2.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.53 43.0 3.84e-01 87.1% 92.0%
5048013 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 30.0 3.46e-01 89.5% 75.8%
5005662 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 33.0 3.14e-01 91.1% 51.0%
3221343 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 33.0 3.13e-01 89.5% 51.0%
2979120 882.1.1.3 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal_L5_C 0.52 43.0 3.72e-01 89.5% 75.6%
3220586 11.1.1.1023 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MATH 0.51 31.0 3.52e-01 90.3% 81.1%