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NC_028805.1__YP_009199237.1__AVV11_gp015__00176
Bact-VirNC_028805.1__YP_009199237.1__AVV11_gp015__00176
Identity
- Accession:
- NC_028805 ↗
- Kingdom:
- phage
Quality
93.9
mean pLDDT
Taxonomy
TaxID: 1691954
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-48
Domain cluster:
rep: gwe1_scaffold_79_prodigal-single.1__X__X__00117__D2-47
D2
high
residues 60-127
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 54.0 | 5.32e-01 | 100.0% | 68.1% |
| 2p4tA00 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 53.0 | 5.70e-01 | 100.0% | 84.5% |
| 5ycqA00 | 2.30.30.390 | Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain | 0.75 | 51.0 | 4.91e-01 | 100.0% | 62.3% |
| 4qucA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.71 | 43.0 | 4.61e-01 | 75.0% | 73.2% |
| 6bogA02 | 2.30.30.930 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 46.0 | 4.86e-01 | 100.0% | 80.0% |
| 4epcA01 | 2.30.30.170 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 59.0 | 5.61e-01 | 100.0% | 81.5% |
| 1v29B02 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 60.0 | 5.37e-01 | 100.0% | 83.5% |
| 3vygD00 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 60.0 | 4.98e-01 | 100.0% | 71.4% |
| 1e0bA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.66 | 43.0 | 4.57e-01 | 91.2% | 75.4% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 45.0 | 4.23e-01 | 100.0% | 61.6% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 49.0 | 5.05e-01 | 100.0% | 92.2% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 42.0 | 4.48e-01 | 85.3% | 87.5% |
| 6jy5B00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.61 | 42.0 | 4.03e-01 | 73.5% | 90.2% |
| 1vq8A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 41.0 | 3.98e-01 | 85.3% | 65.4% |
| 6ro0D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 46.0 | 3.92e-01 | 86.8% | 91.8% |
| 3tqhA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.56 | 44.0 | 3.38e-01 | 92.6% | 98.4% |
| 2gu3A01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 38.0 | 3.88e-01 | 98.5% | 76.9% |
| 1x6oA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 44.0 | 4.23e-01 | 91.2% | 92.4% |
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 36.0 | 3.78e-01 | 97.1% | 77.8% |
| 1nnvA01 | 3.10.450.140 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative | 0.53 | 42.0 | 3.87e-01 | 95.6% | 94.0% |
| 3be3A00 | 2.30.30.320 | Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain | 0.52 | 43.0 | 4.16e-01 | 100.0% | 82.9% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.52 | 40.0 | 4.04e-01 | 95.6% | 83.1% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 34.0 | 3.81e-01 | 97.1% | 93.9% |
| 2czoA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.52 | 36.0 | 2.96e-01 | 73.5% | 90.8% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.52 | 41.0 | 3.83e-01 | 100.0% | 68.8% |
| 1gutA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.51 | 38.0 | 3.85e-01 | 92.6% | 80.6% |
| 7v6bA01 | 3.30.160.380 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Dicer dimerisation domain | 0.51 | 40.0 | 3.53e-01 | 91.2% | 67.5% |
| 1ufvA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.51 | 35.0 | 3.19e-01 | 75.0% | 99.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5032454 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.79 | 57.0 | 4.58e-01 | 100.0% | 40.0% |
| 567 | 4.1.1.48 ↗ | beta barrels › SH3 › SH3 › SH3 › DHFR_2 | 0.78 | 54.0 | 5.84e-01 | 100.0% | 86.0% |
| 3783160 | 4.1.1.308 ↗ | beta barrels › SH3 › SH3 › SH3 › PF31073 | 0.75 | 56.0 | 5.79e-01 | 100.0% | 83.1% |
| 3435006 | 4.1.1.308 ↗ | beta barrels › SH3 › SH3 › SH3 › PF31073 | 0.72 | 56.0 | 5.79e-01 | 100.0% | 86.2% |
| 4961854 | 4.1.1.492 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26460 | 0.69 | 60.0 | 5.82e-01 | 100.0% | 86.7% |
| 4063512 | 4.1.1.86 ↗ | beta barrels › SH3 › SH3 › SH3 › GW | 0.68 | 61.0 | 5.94e-01 | 100.0% | 89.3% |
| 3639839 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.67 | 44.0 | 4.85e-01 | 91.2% | 86.8% |
| 3242957 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 60.0 | 4.69e-01 | 100.0% | 67.6% |
| 3743614 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.66 | 45.0 | 4.75e-01 | 100.0% | 81.7% |
| 3782292 | 4.1.1.170 ↗ | beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind | 0.66 | 57.0 | 5.42e-01 | 100.0% | 80.0% |
| 3691144 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.65 | 54.0 | 5.42e-01 | 100.0% | 88.6% |
| 3723834 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 54.0 | 5.40e-01 | 100.0% | 88.6% |
| 3866907 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.65 | 54.0 | 5.08e-01 | 100.0% | 76.5% |
| 3770804 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 53.0 | 5.03e-01 | 100.0% | 76.5% |
| 3255737 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.62 | 55.0 | 4.56e-01 | 100.0% | 66.7% |
| 4185615 | 4.1.1.331 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4708 | 0.62 | 55.0 | 4.56e-01 | 100.0% | 64.2% |
| 3936225 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 47.0 | 4.72e-01 | 100.0% | 81.4% |
| 3605503 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 43.0 | 4.58e-01 | 95.6% | 92.7% |
| 3479042 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 48.0 | 4.80e-01 | 100.0% | 84.3% |
| 3411042 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.60 | 47.0 | 4.92e-01 | 100.0% | 95.0% |
| 3575066 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.59 | 46.0 | 4.87e-01 | 100.0% | 98.3% |
| 3706730 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 53.0 | 5.03e-01 | 100.0% | 95.0% |
| 3627275 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 46.0 | 4.80e-01 | 98.5% | 96.7% |
| 5074506 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.59 | 44.0 | 4.05e-01 | 83.8% | 86.2% |
| 5053933 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.59 | 41.0 | 4.20e-01 | 95.6% | 76.9% |
| 3942573 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 39.0 | 4.16e-01 | 100.0% | 82.8% |
| 2095508 | 1170.1.2.4 ↗ | beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Gp_UL130 | 0.57 | 40.0 | 3.96e-01 | 85.3% | 70.3% |
| 4123449 | 4.8.1.35 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 | 0.55 | 45.0 | 4.22e-01 | 97.1% | 72.9% |
| 3734654 | 708.1.2.6 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA | 0.55 | 47.0 | 3.91e-01 | 98.5% | 88.0% |
| 3422852 | 4.1.1.85 ↗ | beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel | 0.55 | 49.0 | 3.99e-01 | 100.0% | 71.2% |
| 3254408 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 41.0 | 4.18e-01 | 100.0% | 87.7% |
| 3185281 | 708.1.2.6 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA | 0.54 | 45.0 | 3.72e-01 | 98.5% | 79.9% |
| 3975862 | 220.1.1.104 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Cpta_toxin | 0.51 | 42.0 | 4.03e-01 | 92.6% | 88.7% |
| 3276323 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.51 | 45.0 | 3.07e-01 | 100.0% | 52.0% |
| 5054384 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.51 | 34.0 | 3.43e-01 | 97.1% | 68.6% |
| 3217772 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 45.0 | 4.20e-01 | 100.0% | 84.7% |