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NC_028808.2__YP_009199341.1__AVU07_agp090__00090

Bact-Vir

NC_028808.2__YP_009199341.1__AVU07_agp090__00090

Identity

Accession:
NC_028808 ↗
Kingdom:
phage

Quality

66.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andersonviridae› Mooglevirus› Escherichia_phage_phiSUSP1

TaxID: 1718606

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-77
PDB
D2 medium residues 78-128
PDB
Domain cluster: rep: MT560058.1__QPI17827.1__POP12_035__00035__D31-87
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2apoB00 2.20.28.40 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › H/ACA ribonucleoprotein complex, subunit Nop10 0.61 33.0 3.27e-01 74.5% 43.6%
3vhtB02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.60 39.0 4.54e-01 82.4% 100.0%
2bjfA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.57 40.0 2.55e-01 78.4% 75.5%
4b6dB00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.55 42.0 4.11e-01 88.2% 75.4%
1y8fA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.55 41.0 4.18e-01 88.2% 84.3%
6xi7B02 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.54 36.0 3.88e-01 74.5% 89.7%
2luyA01 3.30.60.210 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Stc1 domain 0.53 36.0 3.50e-01 70.6% 89.5%
5aedA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 38.0 3.09e-01 78.4% 68.4%
2h5eA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 37.0 2.69e-01 82.4% 47.6%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3690640 375.1.1.221 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf_Tbcl_Rhp7 0.67 46.0 4.71e-01 72.5% 78.0%
3537307 377.1.1.34 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › FAM76 0.66 47.0 3.65e-01 76.5% 40.0%
3528840 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 44.0 4.49e-01 72.5% 78.0%
4926891 377.1.1.126 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Arc_trans_TRASH 0.64 50.0 5.32e-01 86.3% 100.0%
3330188 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.62 46.0 4.22e-01 78.4% 72.3%
3910642 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.61 45.0 4.59e-01 82.4% 90.0%
3634484 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 49.0 4.46e-01 96.1% 98.6%
3482872 376.1.3.56 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PF30811 0.54 41.0 3.60e-01 84.3% 76.2%
3703311 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 38.0 3.87e-01 76.5% 82.0%
3819953 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.53 38.0 3.98e-01 78.4% 97.8%
3477132 376.1.3.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_ash2p_like 0.52 35.0 3.60e-01 70.6% 84.0%