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NC_028818.1__YP_009200149.1__AVT62_gp34__00034
Bact-VirNC_028818.1__YP_009200149.1__AVT62_gp34__00034
Identity
- Accession:
- NC_028818 ↗
- Kingdom:
- phage
Quality
83.4
mean pLDDT
Taxonomy
TaxID: 1636184
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-52
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5i4eA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.77 | 57.0 | 5.95e-01 | 96.1% | 89.1% |
| 4f0fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.76 | 60.0 | 4.89e-01 | 86.3% | 94.6% |
| 5ygbA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 66.0 | 5.69e-01 | 98.0% | 63.7% |
| 1igqB00 | 2.30.30.150 | Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain | 0.74 | 56.0 | 5.45e-01 | 98.0% | 73.7% |
| 3q5zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.72 | 62.0 | 4.79e-01 | 100.0% | 78.5% |
| 6yllA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.72 | 51.0 | 4.34e-01 | 74.5% | 98.8% |
| 6ygnA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.72 | 57.0 | 4.48e-01 | 88.2% | 79.6% |
| 2w1zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.71 | 60.0 | 4.49e-01 | 100.0% | 82.3% |
| 3a7fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.71 | 57.0 | 4.69e-01 | 88.2% | 94.6% |
| 4m4zA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.70 | 58.0 | 5.98e-01 | 98.0% | 100.0% |
| 3s95A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.70 | 55.0 | 4.67e-01 | 88.2% | 94.3% |
| 2acxA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.70 | 52.0 | 4.35e-01 | 82.4% | 91.2% |
| 4jrnA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.69 | 58.0 | 4.33e-01 | 100.0% | 84.4% |
| 2cudA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.68 | 59.0 | 5.11e-01 | 98.0% | 67.1% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 54.0 | 4.46e-01 | 98.0% | 49.0% |
| 4o38A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.67 | 58.0 | 4.76e-01 | 100.0% | 94.8% |
| 2v1qA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.67 | 58.0 | 5.50e-01 | 98.0% | 91.7% |
| 3o2zP00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 54.0 | 4.15e-01 | 90.2% | 69.8% |
| 5f3yA05 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.66 | 56.0 | 4.95e-01 | 96.1% | 75.3% |
| 6bogA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 49.0 | 4.94e-01 | 98.0% | 84.6% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 54.0 | 4.84e-01 | 96.1% | 73.3% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 54.0 | 4.93e-01 | 96.1% | 75.4% |
| 4bfmA00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.64 | 57.0 | 3.48e-01 | 100.0% | 26.2% |
| 2xzsA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.63 | 55.0 | 4.54e-01 | 98.0% | 90.1% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 51.0 | 4.85e-01 | 96.1% | 81.0% |
| 3i6uA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 54.0 | 4.59e-01 | 100.0% | 96.6% |
| 3f3zA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 53.0 | 4.60e-01 | 98.0% | 96.3% |
| 1fotA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 53.0 | 4.20e-01 | 98.0% | 75.7% |
| 3c6kA02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.60 | 49.0 | 4.84e-01 | 100.0% | 87.5% |
| 2xglA00 | 3.10.450.300 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein | 0.60 | 50.0 | 4.26e-01 | 100.0% | 82.4% |
| 4xq7A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.60 | 42.0 | 3.07e-01 | 76.5% | 77.6% |
| 2oc3A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.57 | 44.0 | 2.84e-01 | 88.2% | 42.7% |
| 1ybyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 42.0 | 3.96e-01 | 82.4% | 93.8% |
| 2rajA02 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 40.0 | 3.12e-01 | 78.4% | 83.3% |
| 3dghA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 44.0 | 3.47e-01 | 94.1% | 95.9% |
| 1fl2A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 43.0 | 3.35e-01 | 88.2% | 92.7% |
| 3dcxA00 | 2.30.29.50 | Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain | 0.55 | 42.0 | 3.42e-01 | 92.2% | 59.8% |
| 1vw4502 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 40.0 | 3.48e-01 | 90.2% | 65.2% |
| 2pn2A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.52 | 36.0 | 2.77e-01 | 76.5% | 34.3% |
| 2eifA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 39.0 | 3.81e-01 | 86.3% | 76.3% |
| 1xipA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 40.0 | 2.55e-01 | 100.0% | 39.5% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5051313 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 66.0 | 6.10e-01 | 98.0% | 76.9% |
| 3894798 | 4.1.1.243 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa | 0.74 | 59.0 | 6.14e-01 | 94.1% | 100.0% |
| 3698446 | 206.1.1.74 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr | 0.73 | 58.0 | 3.50e-01 | 88.2% | 23.6% |
| 3198158 | 206.1.1.83 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1, PK_Tyr_Ser-Thr | 0.73 | 58.0 | 3.49e-01 | 88.2% | 23.3% |
| 3178441 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.72 | 57.0 | 3.39e-01 | 86.3% | 35.6% |
| 3476907 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.72 | 61.0 | 3.79e-01 | 100.0% | 30.3% |
| 4243780 | 206.1.1.30 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Kinase-like | 0.72 | 61.0 | 3.69e-01 | 100.0% | 32.3% |
| 3498417 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.71 | 55.0 | 3.40e-01 | 86.3% | 29.5% |
| 3570230 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.71 | 60.0 | 5.03e-01 | 96.1% | 64.4% |
| 3705317 | 206.1.1.71 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo | 0.71 | 56.0 | 3.42e-01 | 88.2% | 33.8% |
| 3782416 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.70 | 59.0 | 3.53e-01 | 100.0% | 22.7% |
| 4928794 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 54.0 | 5.64e-01 | 86.3% | 100.0% |
| 3892663 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.69 | 55.0 | 3.38e-01 | 88.2% | 29.2% |
| 4012542 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.69 | 62.0 | 3.77e-01 | 100.0% | 30.5% |
| 3729327 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.69 | 59.0 | 3.19e-01 | 96.1% | 11.2% |
| 3729254 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.69 | 60.0 | 3.58e-01 | 100.0% | 22.6% |
| 1110850 | 206.1.1.30 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Kinase-like | 0.69 | 58.0 | 3.56e-01 | 100.0% | 34.1% |
| 3605323 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.68 | 59.0 | 3.48e-01 | 100.0% | 27.4% |
| 3650226 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.68 | 52.0 | 3.19e-01 | 84.3% | 25.2% |
| 3939715 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.68 | 58.0 | 3.56e-01 | 100.0% | 27.5% |
| 3741668 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.67 | 57.0 | 3.55e-01 | 96.1% | 30.5% |
| 3907200 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.66 | 59.0 | 3.25e-01 | 100.0% | 12.6% |
| 4062751 | 2.1.1.13 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a | 0.65 | 51.0 | 4.87e-01 | 86.3% | 95.0% |
| 3605930 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.64 | 57.0 | 3.29e-01 | 100.0% | 22.3% |
| 3848271 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.64 | 56.0 | 3.48e-01 | 98.0% | 26.2% |
| 3743574 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.63 | 56.0 | 3.35e-01 | 100.0% | 22.8% |
| None | — | 0.63 | 53.0 | 3.09e-01 | 96.1% | 17.5% | |
| None | — | 0.63 | 55.0 | 3.17e-01 | 98.0% | 17.8% | |
| None | — | 0.62 | 54.0 | 3.11e-01 | 98.0% | 17.3% | |
| 3217506 | 9.1.1.50 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7042 | 0.61 | 50.0 | 4.00e-01 | 100.0% | 80.0% |
| 4949552 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 45.0 | 4.16e-01 | 86.3% | 61.4% |
| 5032977 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 49.0 | 4.36e-01 | 96.1% | 72.5% |
| 3201592 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.57 | 51.0 | 3.30e-01 | 98.0% | 30.5% |
| 5077007 | 2004.1.1.129 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Zot | 0.57 | 47.0 | 3.18e-01 | 96.1% | 98.1% |
| 5014317 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.54 | 39.0 | 3.50e-01 | 82.4% | 52.5% |