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NC_028820.1__YP_009200341.1__AVV33_gp080__00080

Bact-Vir

NC_028820.1__YP_009200341.1__AVV33_gp080__00080

Identity

Accession:
NC_028820 ↗
Kingdom:
phage

Quality

81.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tegunavirus› Yersinia_phage_vB_YenM_TG1

TaxID: 1589265

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-84
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.73 47.0 5.32e-01 92.7% 86.9%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.66 39.0 2.87e-01 100.0% 21.3%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 40.0 4.30e-01 92.7% 73.2%
1s3rA03 3.40.30.40 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Perfringolysin 0.64 46.0 3.91e-01 74.4% 76.7%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.60 45.0 3.66e-01 82.9% 94.3%
4e3wA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.59 43.0 2.84e-01 75.6% 95.1%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.59 43.0 3.68e-01 100.0% 49.6%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 39.0 4.08e-01 98.8% 78.9%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.55 45.0 3.70e-01 90.2% 73.2%
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.54 33.0 3.10e-01 79.3% 49.5%
2durB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.24e-01 91.5% 69.9%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 49.0 4.12e-01 100.0% 63.4%
4m00A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.16e-01 90.2% 66.0%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 48.0 4.05e-01 100.0% 65.4%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 40.0 3.56e-01 82.9% 89.9%
4cciA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 39.0 2.89e-01 84.1% 93.3%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 2.83e-01 86.6% 95.4%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 47.0 4.02e-01 100.0% 64.6%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 47.0 3.93e-01 100.0% 65.2%
6qm7N00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 46.0 3.34e-01 98.8% 56.4%
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.51 46.0 3.78e-01 100.0% 56.6%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2834340 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.67 52.0 4.34e-01 82.9% 90.6%
4048794 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.66 53.0 3.89e-01 86.6% 41.3%
3921654 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.65 48.0 4.07e-01 76.8% 92.5%
2582102 3338.2.1.2 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.64 42.0 3.56e-01 91.5% 42.6%
5059299 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.64 44.0 3.91e-01 72.0% 90.0%
4980359 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.62 42.0 3.78e-01 72.0% 90.8%
4955937 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.61 45.0 3.72e-01 79.3% 53.3%
3510850 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.59 42.0 4.05e-01 100.0% 66.7%
3588455 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 35.0 3.74e-01 96.3% 68.6%
3984091 3180.1.1.1 ↗ a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG 0.58 49.0 4.48e-01 98.8% 70.5%
3839277 241.16.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › protein CagD › protein CagD › CagD 0.56 41.0 3.44e-01 76.8% 53.1%
3988102 222.1.1.16 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl-ACP_TE_C 0.55 40.0 3.81e-01 76.8% 87.0%
3227515 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 39.0 3.42e-01 100.0% 47.3%
3271762 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 44.0 4.24e-01 86.6% 88.2%
3184015 10.1.1.22 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF1349 0.54 43.0 3.18e-01 87.8% 71.2%
3894563 9.1.1.24 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.54 37.0 3.25e-01 73.2% 46.1%
4957926 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.53 42.0 3.01e-01 86.6% 62.0%
3622643 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.53 36.0 3.57e-01 100.0% 67.1%
3520059 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.52 36.0 3.21e-01 72.0% 48.3%
5057849 210.1.1.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.52 47.0 3.49e-01 100.0% 51.2%
4051389 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.51 46.0 3.03e-01 100.0% 72.6%
3773799 60.1.1.12 ↗ beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › Treslin_M 0.51 40.0 3.48e-01 86.6% 84.4%
3998259 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.51 46.0 3.30e-01 98.8% 51.9%
3843727 6140.1.1.2 ↗ alpha superhelices › Cdc45-Binding Domain in Sld3/Treslin › Cdc45-Binding Domain in Sld3/Treslin › Cdc45-Binding Domain in Sld3/Treslin › Treslin_M 0.51 40.0 3.29e-01 86.6% 71.2%
3594178 210.1.1.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.51 46.0 3.36e-01 98.8% 57.2%
4945506 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.51 46.0 3.38e-01 98.8% 58.1%
3543547 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.51 47.0 3.39e-01 100.0% 51.9%
3405593 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.51 46.0 3.64e-01 98.8% 64.4%
3795930 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.50 36.0 3.09e-01 100.0% 45.3%