←Back to structures

NC_028820.1__YP_009200522.1__AVV33_gp134__00261

Bact-Vir

NC_028820.1__YP_009200522.1__AVV33_gp134__00261

Identity

Accession:
NC_028820 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tegunavirus› Yersinia_phage_vB_YenM_TG1

TaxID: 1589265

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-129
PDB
Domain cluster: rep: NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00162__D5-140
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10263.16 best SprT-like 32.4 1.00e-07 89.0% 74.8%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jiuA00 3.30.2010.10 Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" 0.78 60.0 6.53e-01 79.5% 95.2%
4jixB00 3.30.2010.10 Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" 0.78 61.0 6.71e-01 89.8% 99.0%
5e3xA00 1.10.1370.30 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.67 52.0 3.44e-01 81.9% 31.1%
1eb6A00 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.66 52.0 4.64e-01 83.5% 93.8%
4kx7A02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.65 54.0 4.27e-01 88.2% 65.5%
1g12A00 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.62 49.0 4.47e-01 83.5% 94.6%
3lmcA00 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.60 51.0 4.44e-01 92.1% 88.5%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.59 33.0 4.19e-01 74.0% 93.4%
5eowA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 45.0 3.27e-01 82.7% 92.1%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970171 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.84 60.0 6.60e-01 74.0% 100.0%
4942840 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.83 62.0 6.84e-01 85.0% 93.3%
4042388 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.83 60.0 6.58e-01 74.0% 100.0%
4074514 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.80 64.0 6.78e-01 83.5% 97.4%
3644314 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.79 66.0 6.48e-01 86.6% 97.8%
3838568 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.79 62.0 6.80e-01 96.9% 100.0%
1030676 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.78 60.0 6.53e-01 79.5% 95.2%
5055672 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.78 62.0 6.79e-01 88.2% 100.0%
4967466 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.78 58.0 6.33e-01 82.7% 92.4%
4988454 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.78 58.0 6.48e-01 77.2% 99.0%
3988176 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.77 60.0 6.48e-01 83.5% 93.6%
4131753 2498.1.1.26 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M56 0.77 58.0 4.93e-01 78.0% 66.5%
5004191 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.77 57.0 4.69e-01 75.6% 60.0%
4135843 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.77 62.0 6.48e-01 83.5% 93.0%
1030677 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.76 62.0 6.59e-01 90.6% 96.4%
3596937 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.76 53.0 5.86e-01 70.1% 91.0%
5076658 2498.1.1.26 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M56 0.76 58.0 4.57e-01 79.5% 53.2%
5010190 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.76 58.0 4.86e-01 79.5% 72.2%
4962152 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.76 62.0 5.99e-01 85.8% 100.0%
3946602 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.75 66.0 6.78e-01 96.1% 97.5%
1314423 2498.1.1.26 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M56 0.75 61.0 6.60e-01 95.3% 100.0%
3265368 2498.1.1.11 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48,Peptidase_M48_N 0.75 57.0 3.89e-01 78.7% 45.3%
3714462 2498.1.1.36 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › WLM 0.75 57.0 5.47e-01 85.8% 69.7%
5053222 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.75 57.0 4.31e-01 78.7% 56.4%
4958485 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.74 57.0 4.34e-01 79.5% 58.9%
4960523 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.74 63.0 6.58e-01 89.0% 97.4%
4928093 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.74 61.0 6.52e-01 100.0% 100.0%
3839854 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.74 63.0 5.41e-01 100.0% 59.0%
5057817 2498.1.1.26 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M56 0.74 57.0 5.56e-01 81.1% 92.1%
None — 0.74 55.0 5.65e-01 85.0% 81.7%
5071288 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.73 56.0 4.02e-01 79.5% 49.6%
4957647 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.73 57.0 4.61e-01 80.3% 54.8%
5030912 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.73 58.0 4.43e-01 83.5% 48.9%
5061805 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.72 55.0 5.85e-01 97.6% 90.9%
5049657 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.72 56.0 4.30e-01 80.3% 66.3%
4565599 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.72 55.0 4.12e-01 79.5% 55.7%
4948072 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.72 54.0 4.53e-01 78.0% 60.5%
4972072 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.71 59.0 5.47e-01 88.2% 95.0%
4024134 2498.1.1.65 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › MATCAP 0.71 57.0 4.08e-01 85.0% 43.6%
3957469 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.71 62.0 5.84e-01 92.9% 98.0%
4456704 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.70 60.0 4.47e-01 89.8% 62.4%
5016438 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.70 62.0 5.79e-01 93.7% 100.0%
4046090 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.70 60.0 4.48e-01 89.8% 61.7%
5080365 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.70 56.0 4.43e-01 84.3% 68.6%
3386105 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.70 62.0 6.17e-01 93.7% 98.5%
4990867 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.70 59.0 4.49e-01 89.0% 63.3%
5061806 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.70 59.0 6.16e-01 90.6% 98.3%
4961827 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.69 58.0 4.55e-01 89.0% 62.7%
4943050 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.69 58.0 4.30e-01 88.2% 61.0%
5061799 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.69 52.0 4.27e-01 78.0% 50.2%
4929588 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.69 63.0 5.82e-01 98.4% 95.0%
5019353 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.69 58.0 4.74e-01 89.0% 76.8%
5077564 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.68 57.0 4.38e-01 89.8% 62.1%
5007317 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.68 53.0 3.98e-01 80.3% 56.2%
5044525 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.68 60.0 4.52e-01 94.5% 68.3%
5063022 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.68 51.0 4.13e-01 78.7% 63.3%
5031785 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.68 60.0 5.79e-01 93.7% 100.0%
5077870 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.68 59.0 4.83e-01 92.1% 79.1%
5080626 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.68 58.0 6.06e-01 95.3% 100.0%
5054258 2498.1.1.17 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.67 61.0 5.87e-01 98.4% 100.0%
5014385 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.67 56.0 4.61e-01 88.2% 68.9%
3782282 2498.1.1.36 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › WLM 0.67 57.0 5.54e-01 90.6% 90.0%
4935744 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.67 50.0 5.47e-01 80.3% 95.2%
4998530 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.66 57.0 4.48e-01 92.9% 70.6%
4998422 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.66 58.0 4.38e-01 93.7% 57.2%
4644374 2498.1.1.26 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M56 0.66 55.0 4.64e-01 88.2% 64.9%
4416753 2498.1.1.59 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_U49 0.66 59.0 4.53e-01 95.3% 89.2%
5065597 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.66 53.0 4.89e-01 85.0% 88.1%
4412026 2498.1.1.46 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Aspzincin_M35 0.66 52.0 4.65e-01 83.5% 92.6%
3251829 2498.1.1.62 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 0.65 54.0 4.84e-01 87.4% 80.6%
3720589 2498.1.1.36 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › WLM 0.65 57.0 5.61e-01 93.7% 88.1%
4955186 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.65 49.0 3.85e-01 78.0% 58.7%
3754954 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.65 54.0 4.44e-01 89.0% 68.3%
4236605 2498.1.1.20 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M35 0.65 51.0 4.65e-01 83.5% 96.5%
3974318 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.65 56.0 4.57e-01 92.1% 68.9%
4223692 2498.1.1.58 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF2201_N 0.64 54.0 4.93e-01 91.3% 77.6%
4023297 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.62 52.0 4.01e-01 89.8% 54.7%
3983196 2498.1.1.57 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › LPD1 0.61 51.0 4.10e-01 87.4% 86.8%
5028287 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.58 47.0 4.03e-01 85.8% 65.5%
5059890 2498.1.1.43 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Reprolysin_3 0.58 49.0 4.43e-01 91.3% 84.6%
3962296 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.57 44.0 3.65e-01 81.9% 55.2%
None — 0.57 45.0 3.69e-01 83.5% 56.1%
3954373 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 46.0 3.49e-01 85.0% 73.6%
D2 medium residues 156-211
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq3P00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 51.0 4.80e-01 75.0% 66.2%
7t2rC01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.72 49.0 4.90e-01 71.4% 78.9%
2gh1A02 1.10.150.350 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.72 56.0 4.38e-01 82.1% 75.9%
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 46.0 4.93e-01 71.4% 86.7%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 4.18e-01 80.4% 47.6%
2zcuA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.68 52.0 4.17e-01 83.9% 84.3%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 4.17e-01 75.0% 48.3%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 4.91e-01 80.4% 75.9%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 4.46e-01 78.6% 57.9%
1j09A05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 51.0 4.33e-01 85.7% 88.8%
2kt0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 44.0 4.71e-01 71.4% 93.6%
3kl4A03 1.10.260.30 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain 0.63 43.0 3.57e-01 73.2% 44.0%
7ar7E01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.62 42.0 4.11e-01 71.4% 69.8%
2hh7A00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.62 35.0 3.07e-01 71.4% 36.5%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 44.0 4.21e-01 76.8% 79.1%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 44.0 3.83e-01 75.0% 77.0%
1b9mB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 3.88e-01 83.9% 48.5%
1fi2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 44.0 3.04e-01 80.4% 75.1%
3g3oA00 3.20.100.30 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain 0.59 49.0 3.18e-01 94.6% 48.0%
1v9mA02 1.20.1690.10 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain 0.59 40.0 3.35e-01 71.4% 75.2%
2l6aA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.59 41.0 3.46e-01 75.0% 48.0%
3jr7A01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.59 41.0 3.22e-01 75.0% 34.7%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 43.0 3.95e-01 91.1% 83.3%
1kq4A00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.55 39.0 2.79e-01 80.4% 78.3%
4bx8A04 1.25.40.850 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Sec1/Munc18 (SM) protein, domain 3b 0.53 36.0 3.19e-01 71.4% 55.4%
7ymiD01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.53 38.0 2.79e-01 91.1% 25.0%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.50 37.0 3.24e-01 78.6% 98.8%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5030241 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.84 60.0 5.87e-01 75.0% 75.0%
5028731 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.83 59.0 5.78e-01 75.0% 75.0%
5043409 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.81 58.0 6.26e-01 75.0% 93.3%
5072522 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 59.0 5.99e-01 76.8% 85.5%
4938071 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 57.0 6.24e-01 76.8% 97.8%
5068868 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.79 54.0 6.26e-01 73.2% 100.0%
5058272 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.77 55.0 5.93e-01 75.0% 93.3%
5002775 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.76 50.0 5.63e-01 73.2% 95.0%
3300095 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.74 55.0 5.22e-01 78.6% 92.3%
3996384 3455.1.1.7 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors › COMM_HN 0.74 51.0 5.18e-01 73.2% 76.4%
3813623 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.73 55.0 4.29e-01 78.6% 76.4%
4942671 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.73 50.0 5.62e-01 71.4% 100.0%
4102958 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.70 49.0 4.72e-01 75.0% 67.7%
4987105 101.1.1.275 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GerE 0.70 50.0 4.39e-01 76.8% 50.6%
3485420 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.69 53.0 5.23e-01 85.7% 86.7%
4076463 101.1.1.515 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF30254 0.68 47.0 4.27e-01 75.0% 76.2%
3208933 101.1.1.69 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_7 0.67 47.0 3.54e-01 75.0% 32.9%
4053440 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.66 49.0 4.51e-01 80.4% 93.3%
4926838 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.66 49.0 4.75e-01 82.1% 78.5%
3951084 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.65 50.0 4.69e-01 85.7% 74.3%
2546344 3826.1.1.1 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Trns_repr_metal 0.63 36.0 3.54e-01 71.4% 51.7%
3201282 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.63 45.0 4.35e-01 76.8% 67.7%
3779372 220.1.1.115 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_19 0.61 35.0 2.46e-01 76.8% 17.8%
4951783 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 41.0 3.35e-01 71.4% 49.0%
5000156 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 41.0 4.33e-01 78.6% 94.0%
3734655 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.56 40.0 2.92e-01 82.1% 51.3%