←Back to structures

NC_028821.1__YP_009200526.1__AVU83_gp03__00003

Bact-Vir

NC_028821.1__YP_009200526.1__AVU83_gp03__00003

Identity

Accession:
NC_028821 ↗
Kingdom:
phage

Quality

93.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_StB20-like

TaxID: 1732064

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-129
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06486.17 best DUF1093 50.0 5.30e-13 90.0% 95.1%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nppA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.93 84.0 8.17e-01 100.0% 87.4%
2k5qA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.81 75.0 6.82e-01 100.0% 83.8%
2k5wA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.76 71.0 6.28e-01 100.0% 84.7%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 53.0 5.12e-01 90.0% 96.7%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 55.0 4.88e-01 100.0% 79.8%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 52.0 4.83e-01 91.3% 91.3%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 50.0 4.69e-01 87.5% 92.2%
4tquS02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.63 45.0 4.88e-01 91.3% 93.8%
2k5vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 50.0 4.74e-01 88.7% 83.7%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 49.0 5.03e-01 87.5% 100.0%
2qw7C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.62 53.0 5.06e-01 96.2% 97.9%
3ckiB00 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 50.0 4.49e-01 93.8% 77.7%
1quqB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 53.0 4.74e-01 98.8% 68.4%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 44.0 3.70e-01 78.8% 67.2%
3kkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 42.0 3.43e-01 75.0% 51.4%
3p26B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 46.0 4.35e-01 88.7% 99.0%
3sqfA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.57 42.0 4.02e-01 78.8% 93.7%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 44.0 3.45e-01 85.0% 56.0%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 36.0 3.27e-01 80.0% 48.6%
4lgqA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.39e-01 76.2% 55.6%
3f9sB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.36e-01 78.8% 66.7%
4it7A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.62e-01 78.8% 71.0%
2xzmE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 39.0 3.45e-01 76.2% 69.8%
2vqeE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 37.0 4.04e-01 72.5% 93.8%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.51e-01 77.5% 61.3%
2qiyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.37e-01 80.0% 68.7%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 41.0 2.84e-01 83.7% 58.0%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 44.0 3.63e-01 92.5% 73.4%
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 36.0 3.29e-01 73.8% 95.7%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.52 37.0 2.84e-01 75.0% 95.6%
6a5gA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.22e-01 78.8% 72.8%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.51 37.0 3.03e-01 78.8% 85.1%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.09e-01 78.8% 43.2%
5xd7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 37.0 3.26e-01 92.5% 50.4%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.50 37.0 3.06e-01 77.5% 56.9%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589080 2.12.1.1 ↗ beta barrels › OB-fold › BC4932-like › BC4932-like › DUF1093 0.98 90.0 8.08e-01 100.0% 73.8%
4033829 2.12.1.1 ↗ beta barrels › OB-fold › BC4932-like › BC4932-like › DUF1093 0.97 88.0 8.89e-01 100.0% 95.0%
4586453 2.12.1.1 ↗ beta barrels › OB-fold › BC4932-like › BC4932-like › DUF1093 0.94 85.0 7.95e-01 100.0% 80.0%
3588024 2.12.1.1 ↗ beta barrels › OB-fold › BC4932-like › BC4932-like › DUF1093 0.92 88.0 8.30e-01 100.0% 93.5%
3587975 2.12.1.1 ↗ beta barrels › OB-fold › BC4932-like › BC4932-like › DUF1093 0.91 87.0 7.39e-01 100.0% 72.5%
3588396 2.12.1.1 ↗ beta barrels › OB-fold › BC4932-like › BC4932-like › DUF1093 0.86 81.0 7.29e-01 100.0% 89.5%
3970847 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 61.0 6.41e-01 87.5% 92.9%
4034487 2.12.1.0 ↗ beta barrels › OB-fold › BC4932-like › BC4932-like 0.77 63.0 6.52e-01 100.0% 93.3%
439 2.12.1.1 ↗ beta barrels › OB-fold › BC4932-like › BC4932-like › DUF1093 0.76 71.0 6.34e-01 100.0% 87.0%
5037223 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.74 52.0 5.83e-01 77.5% 98.3%
4259370 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 49.0 5.66e-01 82.5% 100.0%
3289386 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 58.0 5.65e-01 85.0% 86.4%
3970846 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 56.0 5.67e-01 83.7% 83.7%
3279044 2.1.1.314 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27099 0.72 54.0 5.81e-01 81.2% 98.5%
3285634 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 55.0 5.30e-01 82.5% 82.2%
3961460 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 60.0 4.90e-01 93.8% 72.0%
3961045 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 56.0 5.26e-01 86.3% 77.0%
3285635 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 61.0 5.83e-01 98.8% 95.8%
3279764 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 53.0 5.53e-01 82.5% 100.0%
3700294 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 61.0 5.27e-01 100.0% 79.2%
3610887 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 60.0 5.38e-01 100.0% 86.1%
3250428 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 52.0 4.35e-01 83.7% 54.5%
3955464 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 55.0 5.35e-01 90.0% 91.1%
3291641 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 56.0 5.30e-01 91.3% 91.6%
4982481 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 52.0 4.99e-01 85.0% 86.3%
3252847 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 53.0 5.23e-01 85.0% 94.1%
373062 2.1.1.74 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Phage_SSB 0.67 55.0 5.33e-01 90.0% 93.3%
5045419 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 47.0 5.11e-01 85.0% 90.8%
4956351 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 52.0 3.24e-01 86.3% 16.5%
3969377 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 50.0 5.21e-01 85.0% 89.2%
3386801 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 56.0 5.22e-01 96.2% 91.0%
152653 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.65 53.0 5.12e-01 90.0% 96.7%
3657702 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 56.0 4.73e-01 100.0% 85.7%
3666655 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 56.0 4.89e-01 100.0% 97.6%
3718166 2.1.1.105 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NMD3_OB 0.64 53.0 4.72e-01 91.3% 80.0%
3659298 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.64 55.0 4.45e-01 100.0% 65.5%
2544590 2.1.1.58 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF35_N 0.62 49.0 4.33e-01 85.0% 86.4%
3374948 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.62 54.0 5.11e-01 100.0% 97.0%
3200706 2.1.1.23 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1 0.62 54.0 4.38e-01 100.0% 76.9%
5045871 2.1.1.17 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.62 47.0 4.98e-01 82.5% 97.1%
2541776 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.61 48.0 4.40e-01 88.7% 87.2%
3658019 2.1.1.285 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3, CDC24_OB2 0.61 49.0 3.38e-01 91.3% 28.7%
3366703 2.1.1.157 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB2 0.60 48.0 4.14e-01 90.0% 69.6%
3662669 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.59 51.0 4.26e-01 100.0% 75.3%
4600473 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 43.0 3.65e-01 78.8% 48.1%
4957055 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.57 42.0 4.38e-01 77.5% 86.7%
4878195 243.1.1.10 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.56 41.0 3.73e-01 77.5% 67.3%
4959598 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 42.0 3.70e-01 81.2% 80.8%
3506301 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.55 46.0 3.62e-01 96.2% 70.8%
3618949 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 47.0 4.58e-01 98.8% 86.7%
3678038 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.55 40.0 4.09e-01 77.5% 96.0%
4593266 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 38.0 3.95e-01 82.5% 81.3%
3334339 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.53 38.0 2.78e-01 77.5% 31.4%
3589504 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.53 40.0 3.05e-01 80.0% 65.0%
4355655 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.53 39.0 3.41e-01 80.0% 76.8%
4980017 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 40.0 3.08e-01 81.2% 66.9%
4958552 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 44.0 4.03e-01 100.0% 69.6%
3966293 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 37.0 3.80e-01 76.2% 89.3%