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NC_028828.1__YP_009201081.1__THELONIOUSMONK_68__00068

Bact-Vir

NC_028828.1__YP_009201081.1__THELONIOUSMONK_68__00068

Identity

Accession:
NC_028828 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-55
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.83 76.0 6.57e-01 100.0% 69.0%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.82 72.0 6.34e-01 100.0% 98.6%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.82 75.0 6.38e-01 100.0% 89.2%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.82 74.0 6.24e-01 100.0% 62.3%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.81 72.0 5.07e-01 100.0% 50.0%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 71.0 6.53e-01 100.0% 85.5%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.80 72.0 6.04e-01 100.0% 84.8%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.80 71.0 6.65e-01 100.0% 84.5%
4epcA01 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.80 71.0 5.92e-01 100.0% 81.5%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.80 70.0 4.47e-01 100.0% 30.8%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.79 70.0 4.92e-01 100.0% 49.7%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 69.0 6.71e-01 100.0% 98.1%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 65.0 6.00e-01 100.0% 79.0%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.75 65.0 6.23e-01 100.0% 85.2%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.74 57.0 5.50e-01 85.4% 75.0%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.72 61.0 5.76e-01 100.0% 88.7%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 65.0 4.63e-01 100.0% 40.3%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.72 57.0 5.36e-01 89.6% 75.4%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 54.0 5.25e-01 85.4% 85.2%
2b2tB02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 55.0 4.77e-01 85.4% 59.2%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 56.0 5.68e-01 100.0% 95.7%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.69 57.0 4.65e-01 95.8% 87.2%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 54.0 4.49e-01 89.6% 58.2%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 56.0 4.32e-01 100.0% 66.9%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 5.11e-01 100.0% 85.7%
6ro0B02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 50.0 3.94e-01 87.5% 82.7%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 51.0 4.64e-01 91.7% 62.9%
2rkuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 46.0 3.89e-01 83.3% 91.0%
3cngC02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.62 48.0 3.45e-01 85.4% 51.0%
4js8A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 48.0 4.05e-01 89.6% 92.1%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 50.0 4.02e-01 100.0% 78.2%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.61 42.0 4.03e-01 93.8% 61.4%
1c48A00 2.40.50.70 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 48.0 4.30e-01 89.6% 98.6%
4wqmA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 46.0 3.77e-01 87.5% 85.7%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.60 44.0 4.35e-01 81.2% 100.0%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.59 48.0 4.06e-01 97.9% 83.1%
3sonA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 40.0 2.98e-01 75.0% 84.2%
2b0vA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 44.0 3.15e-01 83.3% 56.8%
1jsgA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.58 47.0 3.65e-01 91.7% 79.3%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.57 45.0 3.42e-01 95.8% 51.1%
2dazA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 42.0 3.38e-01 89.6% 73.2%
5l77A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 40.0 3.06e-01 87.5% 30.1%
3r4qA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 40.0 3.04e-01 83.3% 78.0%
1t9fA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 42.0 2.98e-01 91.7% 58.4%
1r8nA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 41.0 2.92e-01 95.8% 44.9%
2yt7A01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 38.0 3.37e-01 89.6% 82.8%
2v90C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 37.0 3.26e-01 89.6% 75.3%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3174977 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.89 76.0 5.97e-01 100.0% 47.4%
4271974 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.86 79.0 7.11e-01 100.0% 76.6%
3621303 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 78.0 5.57e-01 100.0% 53.8%
4931822 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 71.0 6.43e-01 100.0% 70.8%
4376886 4.1.1.241 beta barrels › SH3 › SH3 › SH3 › NifZ 0.81 73.0 6.09e-01 100.0% 83.7%
3591224 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 72.0 7.13e-01 100.0% 94.0%
3256432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 73.0 6.78e-01 100.0% 83.3%
4349149 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 71.0 5.77e-01 100.0% 82.2%
3607981 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 72.0 6.21e-01 100.0% 77.0%
4261760 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.80 71.0 5.64e-01 100.0% 72.6%
3686225 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 69.0 4.59e-01 100.0% 40.5%
3461775 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 67.0 5.84e-01 100.0% 92.0%
3568329 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 69.0 6.41e-01 100.0% 85.0%
3638086 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 67.0 4.54e-01 100.0% 46.1%
3768347 4.1.1.230 beta barrels › SH3 › SH3 › SH3 › DUF7030 0.76 67.0 6.10e-01 100.0% 89.2%
3935116 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.75 58.0 5.34e-01 87.5% 69.2%
3957249 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 63.0 6.05e-01 97.9% 83.6%
3622024 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.74 58.0 5.44e-01 87.5% 75.0%
5020252 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.74 63.0 4.74e-01 100.0% 39.2%
4929262 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.73 64.0 4.48e-01 100.0% 37.4%
3277860 4.1.1.368 beta barrels › SH3 › SH3 › SH3 › DUF3097_N 0.71 60.0 5.52e-01 100.0% 72.3%
3388887 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.71 57.0 5.24e-01 91.7% 70.8%
3238955 4.1.1.377 beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.71 60.0 5.18e-01 100.0% 68.8%
3964422 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.70 60.0 4.21e-01 100.0% 30.0%
3623819 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.69 55.0 3.45e-01 95.8% 26.9%
3608028 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.69 53.0 3.24e-01 85.4% 25.3%
3975862 220.1.1.104 beta barrels › PH domain-like › PH domain-like › PH domain-like › Cpta_toxin 0.69 55.0 4.72e-01 91.7% 55.0%
3558947 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.69 56.0 3.47e-01 95.8% 28.7%
3744137 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.68 56.0 3.42e-01 95.8% 26.3%
3389948 4.8.1.29 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SH3_AEBP2_C 0.68 51.0 4.08e-01 83.3% 43.0%
3703749 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 57.0 5.26e-01 100.0% 75.4%
3619978 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 55.0 3.35e-01 95.8% 23.5%
3177693 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 55.0 3.31e-01 95.8% 22.1%
3214162 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 52.0 4.89e-01 87.5% 76.7%
3265965 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 54.0 3.19e-01 95.8% 19.6%
3585214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 51.0 4.19e-01 91.7% 43.0%
3626927 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 51.0 4.92e-01 97.9% 74.5%
3575262 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.67 53.0 3.27e-01 95.8% 33.9%
3442506 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 54.0 3.24e-01 95.8% 21.7%
2759872 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.67 55.0 3.46e-01 95.8% 32.0%
3900096 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.66 54.0 3.36e-01 95.8% 29.0%
3701830 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 52.0 3.28e-01 93.8% 29.7%
3928760 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.66 56.0 3.37e-01 100.0% 21.9%
3931577 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 53.0 3.35e-01 95.8% 31.1%
3245395 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 52.0 3.22e-01 95.8% 26.0%
461497 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 52.0 3.75e-01 95.8% 52.2%
3701943 206.1.1.78 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kinase-like 0.66 53.0 3.20e-01 95.8% 22.7%
3858433 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.66 52.0 3.29e-01 95.8% 29.7%
3605927 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.65 49.0 3.72e-01 83.3% 75.0%
3927695 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 53.0 3.31e-01 100.0% 24.1%
3540753 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.65 53.0 3.31e-01 95.8% 29.3%
3683109 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 51.0 3.07e-01 95.8% 21.7%
3411655 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 52.0 2.97e-01 95.8% 14.2%
4258307 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 52.0 3.33e-01 100.0% 27.5%
3504270 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.63 51.0 3.19e-01 100.0% 27.2%
3991944 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.63 49.0 3.22e-01 95.8% 38.5%
3931872 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 50.0 3.09e-01 95.8% 33.5%
3792511 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.62 48.0 3.01e-01 100.0% 26.8%
4027502 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.78e-01 100.0% 76.9%
3480049 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 47.0 2.94e-01 95.8% 28.6%
3726140 206.1.1.48 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › FTA2 0.61 46.0 2.99e-01 89.6% 37.3%
3390463 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.61 47.0 4.43e-01 95.8% 75.4%
3629867 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 46.0 2.87e-01 95.8% 24.9%
3243274 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 46.0 2.94e-01 100.0% 27.6%
3576235 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.26e-01 100.0% 81.3%
3917309 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.58 45.0 2.89e-01 100.0% 30.0%
3895174 206.1.1.76 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1, Pkinase_fungal 0.58 45.0 2.86e-01 100.0% 28.7%
3389075 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 47.0 3.65e-01 100.0% 68.7%