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NC_028829.1__YP_009201156.1__AVU32_gp053__00053
Bact-VirNC_028829.1__YP_009201156.1__AVU32_gp053__00053
Identity
- Accession:
- NC_028829 ↗
- Kingdom:
- phage
Quality
74.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Schizotequatrovirus›
Vibrio_phage_ValKK3
TaxID: 1610855
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-82
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v9vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 45.0 | 4.46e-01 | 100.0% | 70.0% |
| 4c9yA00 | 1.10.10.1890 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like | 0.63 | 45.0 | 3.46e-01 | 81.0% | 35.0% |
| 4kvxA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 41.0 | 3.11e-01 | 100.0% | 26.3% |
| 1z05A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 46.0 | 4.27e-01 | 100.0% | 68.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3935086 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.73 | 40.0 | 2.89e-01 | 79.3% | 20.0% |
| 3961937 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 58.0 | 6.00e-01 | 100.0% | 90.9% |
| 4980453 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 49.0 | 4.24e-01 | 100.0% | 51.1% |
| 3968031 | 2003.1.2.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase, Pyr_redox_2, NAD_binding_8 | 0.65 | 49.0 | 3.22e-01 | 100.0% | 20.9% |
| 5065444 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.64 | 47.0 | 3.91e-01 | 79.3% | 43.8% |
| 4560221 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.64 | 48.0 | 3.16e-01 | 100.0% | 20.6% |
| 3723264 | 4012.4.1.0 ↗ | a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain | 0.61 | 41.0 | 4.54e-01 | 79.3% | 91.1% |
| 4962053 | 2008.1.1.108 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 | 0.59 | 46.0 | 3.05e-01 | 100.0% | 21.3% |
| 4478358 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 43.0 | 3.54e-01 | 81.0% | 49.5% |
| 3963083 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 50.0 | 3.78e-01 | 100.0% | 42.2% |
| 3403619 | 3054.1.1.0 ↗ | alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol | 0.55 | 41.0 | 3.36e-01 | 81.0% | 89.6% |
| 5011607 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 49.0 | 3.72e-01 | 100.0% | 52.1% |
| 4998735 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 49.0 | 3.71e-01 | 100.0% | 51.1% |
| 5013924 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.53 | 46.0 | 3.98e-01 | 100.0% | 62.2% |
| 3600035 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 40.0 | 3.94e-01 | 89.7% | 96.9% |