←Back to structures

NC_028829.1__YP_009201247.1__AVU32_gp144__00144

Bact-Vir

NC_028829.1__YP_009201247.1__AVU32_gp144__00144

Identity

Accession:
NC_028829 ↗
Kingdom:
phage

Quality

91.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Schizotequatrovirus› Vibrio_phage_ValKK3

TaxID: 1610855

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-63
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 57.0 6.28e-01 100.0% 96.0%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.77 64.0 5.19e-01 100.0% 50.5%
1nh2C00 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.70 48.0 5.18e-01 82.3% 90.0%
2n88A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 43.0 4.50e-01 83.9% 69.0%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.67 60.0 5.21e-01 100.0% 77.9%
5jpnC02 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 55.0 4.11e-01 90.3% 56.7%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 5.45e-01 100.0% 93.3%
2b39A13 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 54.0 4.20e-01 90.3% 65.4%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.65 59.0 5.59e-01 100.0% 95.8%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 4.81e-01 100.0% 80.3%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.61 45.0 4.78e-01 95.2% 87.5%
1xweA01 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 49.0 3.80e-01 90.3% 63.6%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 49.0 4.18e-01 95.2% 79.4%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.58 38.0 3.05e-01 79.0% 30.9%
1g6zA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 37.0 3.60e-01 80.6% 60.0%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 40.0 4.01e-01 95.2% 72.7%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 47.0 3.68e-01 96.8% 80.1%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.55 47.0 4.48e-01 100.0% 80.3%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 45.0 3.23e-01 96.8% 40.4%
3au0A01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 41.0 3.26e-01 88.7% 91.9%
4fb2A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 43.0 2.73e-01 95.2% 72.7%
3sjnA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 37.0 3.07e-01 75.8% 76.5%
5xjnA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 42.0 2.63e-01 95.2% 77.4%
1y44A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 38.0 2.60e-01 83.9% 94.8%
3sqfA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 38.0 3.45e-01 87.1% 85.3%
5m0nA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.50 40.0 2.53e-01 95.2% 73.3%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4078260 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.81 66.0 5.72e-01 100.0% 60.0%
4196537 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.78 64.0 6.04e-01 100.0% 74.7%
3271407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 60.0 5.46e-01 100.0% 65.9%
3913782 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 59.0 5.85e-01 100.0% 82.8%
3328224 4.1.1.336 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7699 0.73 66.0 5.12e-01 100.0% 58.5%
3256053 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.71 56.0 4.92e-01 100.0% 58.9%
3730835 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.70 56.0 4.81e-01 100.0% 55.8%
3591306 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 62.0 6.00e-01 100.0% 85.7%
3594328 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 62.0 5.45e-01 100.0% 68.9%
3580428 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.70e-01 95.2% 91.7%
3798523 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 61.0 5.60e-01 100.0% 90.0%
3287628 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 57.0 5.65e-01 100.0% 89.1%
3908789 4.1.1.354 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.66 60.0 3.83e-01 100.0% 26.0%
3519308 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.59e-01 100.0% 93.3%
1175040 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.66 53.0 5.44e-01 100.0% 93.3%
4941652 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.66 58.0 4.66e-01 100.0% 58.4%
4229837 4.1.1.354 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.66 59.0 4.19e-01 100.0% 40.0%
3627576 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 57.0 5.59e-01 100.0% 89.2%
3584555 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 57.0 5.44e-01 100.0% 82.9%
3706753 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 53.0 4.52e-01 100.0% 75.5%
5079843 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 49.0 4.88e-01 100.0% 84.6%
4576422 375.1.1.84 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_15 0.60 44.0 4.28e-01 79.0% 75.7%
5079927 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 51.0 4.55e-01 100.0% 66.7%
4932581 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.58 47.0 4.67e-01 87.1% 83.1%
4486197 243.1.1.76 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.58 49.0 4.04e-01 98.4% 80.8%
4421956 243.1.1.76 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.57 49.0 3.89e-01 98.4% 81.5%
4221728 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.57 47.0 3.26e-01 95.2% 39.1%
3710314 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 47.0 3.56e-01 91.9% 70.3%
3197575 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.56 49.0 4.23e-01 91.9% 73.3%
3284889 243.1.1.76 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.56 48.0 3.91e-01 98.4% 82.5%
4077367 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.55 41.0 4.10e-01 100.0% 81.5%
4080326 243.1.1.76 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.54 47.0 3.82e-01 98.4% 83.3%
4343712 243.1.1.76 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.54 45.0 3.76e-01 98.4% 87.5%
4162701 243.1.1.76 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.54 46.0 3.76e-01 98.4% 82.5%
5000502 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.54 49.0 4.39e-01 100.0% 84.7%
3586559 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.87e-01 96.8% 82.4%
3991048 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.51 40.0 3.63e-01 90.3% 80.0%
4977542 243.1.1.22 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Lumazine_bd_2 0.50 41.0 3.35e-01 95.2% 90.0%