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NC_028829.1__YP_009201254.1__AVU32_gp151__00151

Bact-Vir

NC_028829.1__YP_009201254.1__AVU32_gp151__00151

Identity

Accession:
NC_028829 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Schizotequatrovirus› Vibrio_phage_ValKK3

TaxID: 1610855

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-56
PDB
Domain cluster: representative
CATH (64)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.73 61.0 5.13e-01 92.6% 65.6%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.72 55.0 5.15e-01 83.3% 74.2%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.71 51.0 4.31e-01 75.9% 75.6%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.67 45.0 3.76e-01 77.8% 39.0%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.67 48.0 4.53e-01 81.5% 73.2%
2w00A01 3.90.1570.50 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.67 58.0 4.10e-01 100.0% 74.9%
6zepA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.65 55.0 3.46e-01 100.0% 69.8%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 45.0 4.24e-01 72.2% 63.1%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.65 44.0 3.76e-01 92.6% 41.8%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.65 49.0 3.99e-01 90.7% 41.7%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.65 44.0 3.66e-01 77.8% 39.0%
3wa1A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.65 49.0 3.53e-01 83.3% 98.8%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.64 54.0 3.43e-01 98.1% 31.8%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.64 53.0 5.08e-01 100.0% 92.4%
3f2kB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 47.0 3.30e-01 81.5% 42.1%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.63 54.0 3.86e-01 100.0% 83.6%
1f9cA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 46.0 3.64e-01 81.5% 50.8%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 47.0 3.88e-01 83.3% 87.5%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.63 50.0 3.18e-01 94.4% 20.3%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.63 38.0 3.95e-01 74.1% 64.0%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.63 54.0 4.01e-01 100.0% 81.5%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.62 45.0 3.66e-01 75.9% 72.5%
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.62 45.0 4.72e-01 77.8% 100.0%
3hz4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 51.0 4.12e-01 98.1% 55.8%
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.62 52.0 3.17e-01 98.1% 91.7%
1q7lA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.62 50.0 3.60e-01 100.0% 48.4%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.61 51.0 4.41e-01 100.0% 66.0%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.61 52.0 3.87e-01 98.1% 66.4%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 47.0 2.87e-01 85.2% 40.3%
3fogA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 44.0 3.68e-01 79.6% 85.3%
4euyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 52.0 4.54e-01 100.0% 66.3%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.60 45.0 3.13e-01 79.6% 81.8%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.60 45.0 3.49e-01 79.6% 80.5%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 45.0 3.38e-01 87.0% 42.4%
1vlrA01 3.30.200.40 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain 0.59 44.0 3.75e-01 85.2% 87.8%
3ednA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.59 42.0 3.24e-01 77.8% 88.8%
4ywrA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 50.0 3.38e-01 100.0% 88.2%
5khaB01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.58 48.0 3.12e-01 92.6% 92.3%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.58 43.0 3.26e-01 87.0% 64.2%
2qqzA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 47.0 3.87e-01 100.0% 86.1%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.57 42.0 3.82e-01 81.5% 60.5%
4ns4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 46.0 3.07e-01 98.1% 93.4%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.57 44.0 4.15e-01 88.9% 74.3%
2r5vA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 42.0 3.18e-01 83.3% 39.3%
4o32C00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 47.0 4.13e-01 100.0% 73.6%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.57 46.0 3.10e-01 100.0% 24.9%
4hc5D00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 39.0 3.12e-01 77.8% 32.8%
1zswA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 42.0 3.24e-01 88.9% 42.0%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.56 42.0 3.29e-01 87.0% 59.1%
2wvxA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 45.0 2.92e-01 96.3% 85.6%
2l6cA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 45.0 3.82e-01 98.1% 63.5%
4mchA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.56 45.0 3.07e-01 98.1% 87.2%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 40.0 3.77e-01 94.4% 63.6%
4i6xA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 44.0 3.65e-01 98.1% 61.5%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.22e-01 96.3% 45.5%
4emtA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.54 43.0 3.41e-01 96.3% 82.8%
2vhjA02 2.30.270.20 Mainly Beta › Roll › duf1285 protein fold › 0.54 37.0 3.58e-01 72.2% 75.8%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.38e-01 85.2% 92.7%
2cw1A00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.54 40.0 3.80e-01 81.5% 86.2%
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.40e-01 96.3% 69.3%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 43.0 3.42e-01 100.0% 79.6%
3uw8A02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.53 38.0 3.00e-01 81.5% 45.5%
3nyqA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.51 42.0 3.66e-01 94.4% 68.6%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.51 36.0 2.99e-01 81.5% 56.7%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3714496 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.79 57.0 3.89e-01 77.8% 23.4%
3432156 386.1.1.117 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.74 62.0 6.21e-01 96.3% 90.9%
5033169 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.74 50.0 4.59e-01 70.4% 100.0%
3209694 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.74 64.0 5.29e-01 100.0% 67.0%
3939443 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.74 62.0 5.03e-01 98.1% 88.2%
5007759 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.72 63.0 4.89e-01 96.3% 70.2%
3425722 386.1.1.117 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.72 61.0 5.29e-01 100.0% 61.2%
3811901 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.72 61.0 5.76e-01 96.3% 95.4%
3579466 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.72 52.0 5.16e-01 75.9% 100.0%
3846927 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.71 61.0 5.15e-01 100.0% 68.4%
3358147 220.1.1.241 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EPL1 0.71 51.0 3.32e-01 83.3% 16.8%
5029920 4100.1.1.3 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.71 53.0 5.02e-01 81.5% 73.8%
3618575 633.23.1.38 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › TMEM127 0.71 50.0 3.49e-01 81.5% 22.8%
3924545 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.71 61.0 4.79e-01 100.0% 84.2%
3479226 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.71 60.0 5.02e-01 100.0% 96.0%
4376478 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.70 60.0 5.08e-01 96.3% 87.8%
5021368 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.70 51.0 3.13e-01 77.8% 16.6%
4341865 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.70 51.0 5.08e-01 79.6% 90.9%
5026883 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.69 49.0 4.10e-01 75.9% 53.2%
3788141 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.69 59.0 5.37e-01 98.1% 89.3%
3236050 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.69 58.0 4.66e-01 96.3% 95.5%
3404205 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.68 56.0 4.86e-01 92.6% 77.6%
3931157 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 54.0 5.06e-01 87.0% 90.8%
4138721 101.1.9.20 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PhetRS_B1 0.67 57.0 5.07e-01 100.0% 66.7%
3663924 5.3.1.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop, B_lectin 0.67 44.0 3.43e-01 75.9% 29.6%
5074419 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.67 56.0 5.31e-01 96.3% 87.7%
3979087 4100.1.1.7 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › PF27115 0.67 46.0 4.31e-01 81.5% 57.1%
3728854 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 54.0 5.14e-01 94.4% 100.0%
3708854 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.66 41.0 4.20e-01 72.2% 66.0%
3782338 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 55.0 4.55e-01 90.7% 66.7%
4889754 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.66 49.0 4.78e-01 81.5% 76.7%
3840662 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.65 55.0 3.13e-01 94.4% 47.1%
4966261 4100.1.1.3 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.65 49.0 4.69e-01 83.3% 76.9%
3722736 7579.1.1.92 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Abhydrolase_6 0.65 55.0 3.43e-01 100.0% 95.2%
3188702 7579.1.1.53 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Say1_Mug180 0.65 56.0 3.37e-01 100.0% 78.0%
4004760 64.1.1.5 ↗ beta meanders › WW domain-like › WW domain › WW domain › DUF333 0.65 48.0 5.06e-01 92.6% 100.0%
3477584 2011.1.1.6 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.65 54.0 3.46e-01 100.0% 30.1%
3461521 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.65 46.0 3.60e-01 74.1% 38.3%
3990293 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 46.0 4.60e-01 74.1% 74.5%
3319893 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.65 52.0 4.41e-01 96.3% 82.0%
3787887 896.1.1.2 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.65 47.0 4.37e-01 81.5% 60.3%
3211234 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.64 50.0 3.78e-01 88.9% 69.7%
4352332 3283.1.1.1 ↗ a+b two layers › Nitrogen fixation protein › Nitrogen fixation protein › Nitrogen fixation protein › DUF269 0.64 54.0 4.08e-01 98.1% 52.9%
3394097 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.63 54.0 4.52e-01 100.0% 74.0%
4976056 7584.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins 0.63 47.0 2.83e-01 81.5% 19.5%
4939731 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.62 53.0 5.03e-01 96.3% 84.6%
4238585 375.1.4.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C 0.62 49.0 4.95e-01 87.0% 98.1%
5072132 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.62 50.0 4.61e-01 100.0% 78.8%
3924546 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.62 52.0 4.06e-01 100.0% 84.6%
3370322 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 52.0 4.48e-01 94.4% 74.4%
3709245 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 51.0 4.48e-01 96.3% 69.4%
3656952 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 50.0 3.96e-01 90.7% 71.3%
3965157 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.62 44.0 3.10e-01 77.8% 53.7%
3172478 708.1.1.30 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › PF30069, PF30070 0.61 50.0 3.64e-01 96.3% 40.0%
3956067 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.61 47.0 3.75e-01 88.9% 45.8%
3812257 2003.1.6.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like 0.61 46.0 3.32e-01 87.0% 37.2%
5079418 5050.1.1.10 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 0.61 51.0 3.48e-01 100.0% 47.0%
3271973 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.61 49.0 3.15e-01 98.1% 18.3%
5065204 2011.1.1.6 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.60 51.0 3.31e-01 100.0% 32.5%
4968231 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.60 51.0 3.10e-01 100.0% 24.2%
3687261 3409.1.1.3 ↗ a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › ATG14 0.59 45.0 3.01e-01 81.5% 91.4%
4958522 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.59 50.0 4.76e-01 96.3% 81.5%
3853273 327.11.2.27 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.59 45.0 4.61e-01 85.2% 92.0%
3272228 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 49.0 3.11e-01 94.4% 28.1%
3727253 3922.1.1.250 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › ATG14 0.59 45.0 2.71e-01 83.3% 57.3%
3285549 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.59 40.0 2.77e-01 85.2% 19.5%
2426645 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.58 38.0 3.87e-01 75.9% 67.3%
3962417 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 44.0 2.71e-01 94.4% 12.4%
4628696 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.57 46.0 3.21e-01 100.0% 34.5%
3337688 241.6.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.57 47.0 3.67e-01 100.0% 87.4%
4152585 3016.1.1.1 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.56 45.0 4.04e-01 100.0% 92.2%
3798149 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.56 42.0 2.69e-01 83.3% 19.7%
4167707 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.56 44.0 2.91e-01 98.1% 90.3%
3770804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 42.0 3.78e-01 88.9% 95.3%
3362766 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.56 44.0 4.53e-01 90.7% 98.0%
4968047 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 46.0 3.84e-01 100.0% 52.4%
2774420 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.55 40.0 2.83e-01 81.5% 56.8%
3244558 11.1.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.55 38.0 2.42e-01 77.8% 13.2%
3214114 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 2.88e-01 85.2% 85.0%
5022814 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.54 44.0 4.08e-01 100.0% 97.3%
4948218 243.6.1.12 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA 0.53 42.0 3.84e-01 100.0% 85.9%
3307718 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.53 38.0 3.08e-01 81.5% 65.8%
5083058 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.52 43.0 3.88e-01 100.0% 93.8%
4025577 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.51 38.0 2.72e-01 85.2% 58.9%
3995842 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.50 41.0 2.91e-01 98.1% 44.3%