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NC_028835.1__YP_009201829.1__CL2_34__00034
Bact-VirNC_028835.1__YP_009201829.1__CL2_34__00034
Identity
- Accession:
- NC_028835 ↗
- Kingdom:
- phage
Quality
80.0
mean pLDDT
Taxonomy
TaxID: 1739608
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-63
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10543.15 best | ORF6N | 45.6 | 9.40e-12 | 100.0% | 58.1% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fmyA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 54.0 | 4.58e-01 | 76.9% | 46.3% |
| 3gpvA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.77 | 53.0 | 4.03e-01 | 88.5% | 32.7% |
| 3tgnB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 51.0 | 4.82e-01 | 71.2% | 74.6% |
| 3dv8A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 52.0 | 4.54e-01 | 78.8% | 48.7% |
| 3p7nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 51.0 | 4.57e-01 | 71.2% | 55.6% |
| 6v7xB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 50.0 | 4.93e-01 | 71.2% | 73.2% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 50.0 | 3.74e-01 | 71.2% | 32.6% |
| 4ev0A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 50.0 | 4.42e-01 | 78.8% | 49.4% |
| 1s6lA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 48.0 | 4.81e-01 | 78.8% | 69.2% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 48.0 | 3.68e-01 | 86.5% | 30.6% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 50.0 | 3.64e-01 | 78.8% | 28.3% |
| 5trdA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 49.0 | 4.27e-01 | 92.3% | 47.6% |
| 1mkmB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 48.0 | 4.26e-01 | 86.5% | 50.0% |
| 4ch7A01 | 1.10.10.2890 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.68 | 59.0 | 4.61e-01 | 100.0% | 74.1% |
| 1on2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 50.0 | 4.55e-01 | 86.5% | 58.3% |
| 4ijaA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 49.0 | 4.62e-01 | 94.2% | 65.1% |
| 6uvuA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 47.0 | 3.82e-01 | 90.4% | 38.5% |
| 5f7qC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 48.0 | 4.46e-01 | 100.0% | 60.0% |
| 2ek5B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 46.0 | 3.65e-01 | 86.5% | 36.7% |
| 3i71B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 49.0 | 4.78e-01 | 98.1% | 79.3% |
| 2mtzA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.60 | 40.0 | 4.07e-01 | 71.2% | 72.0% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3976327 | 101.1.9.41 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N | 0.99 | 71.0 | 7.70e-01 | 75.0% | 86.7% |
| 5004272 | 101.1.9.41 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N | 0.92 | 77.0 | 7.57e-01 | 100.0% | 85.5% |
| 3983963 | 101.1.9.41 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N | 0.90 | 81.0 | 6.35e-01 | 100.0% | 49.5% |
| 4950846 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.81 | 52.0 | 5.29e-01 | 82.7% | 68.0% |
| 5074175 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.81 | 55.0 | 5.68e-01 | 76.9% | 74.0% |
| 4977342 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.79 | 55.0 | 5.64e-01 | 73.1% | 82.0% |
| 4965520 | 101.1.1.556 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF7317 | 0.78 | 50.0 | 4.93e-01 | 86.5% | 61.8% |
| 4928805 | 101.1.2.233 ↗ | alpha arrays › HTH › HTH › winged helix domain › NirdL-like_HTH | 0.75 | 52.0 | 4.60e-01 | 73.1% | 54.7% |
| 4355235 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.75 | 51.0 | 5.25e-01 | 71.2% | 86.0% |
| 3589675 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.74 | 47.0 | 4.84e-01 | 80.8% | 68.0% |
| 4100484 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.73 | 50.0 | 4.97e-01 | 71.2% | 78.2% |
| 4100614 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.73 | 50.0 | 4.93e-01 | 71.2% | 80.0% |
| 5083248 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.71 | 56.0 | 5.35e-01 | 92.3% | 73.3% |
| 5078515 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 49.0 | 5.23e-01 | 86.5% | 82.2% |
| 5028046 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.70 | 48.0 | 4.76e-01 | 86.5% | 67.3% |
| 4447894 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.70 | 48.0 | 4.76e-01 | 71.2% | 76.4% |
| 5045632 | 101.1.2.881 ↗ | alpha arrays › HTH › HTH › winged helix domain › UPF0175 | 0.66 | 50.0 | 5.17e-01 | 90.4% | 86.0% |
| 1179381 | 101.1.1.2 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC | 0.65 | 45.0 | 4.58e-01 | 73.1% | 72.5% |
| 5053441 | 101.1.1.371 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 | 0.65 | 49.0 | 4.70e-01 | 82.7% | 70.0% |