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NC_028835.1__YP_009201837.1__CL2_42__00042
Bact-VirNC_028835.1__YP_009201837.1__CL2_42__00042
Identity
- Accession:
- NC_028835 ↗
- Kingdom:
- phage
Quality
76.8
mean pLDDT
Taxonomy
TaxID: 1739608
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 139-181
Domain cluster:
representative
CATH (71)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gccA00 | 3.30.730.10 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain | 0.95 | 88.0 | 7.57e-01 | 100.0% | 74.6% |
| 7wq5A01 | 3.30.730.10 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain | 0.94 | 87.0 | 7.73e-01 | 100.0% | 81.0% |
| 3nyiA02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.75 | 63.0 | 4.50e-01 | 100.0% | 45.3% |
| 3pf7B00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.75 | 51.0 | 2.87e-01 | 72.1% | 25.3% |
| 7xc2A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 45.0 | 3.32e-01 | 100.0% | 24.5% |
| 4wxaA00 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.73 | 56.0 | 4.59e-01 | 88.4% | 84.5% |
| 1pzxA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.73 | 63.0 | 4.59e-01 | 100.0% | 43.4% |
| 2azeB00 | 6.10.250.540 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.72 | 38.0 | 2.81e-01 | 83.7% | 20.8% |
| 2qz8A02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.71 | 56.0 | 4.60e-01 | 88.4% | 82.7% |
| 3k1hA00 | 3.30.1120.180 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 | 0.71 | 48.0 | 3.56e-01 | 72.1% | 80.0% |
| 4xrfA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 44.0 | 3.02e-01 | 97.7% | 19.0% |
| 2cteA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.71 | 54.0 | 4.49e-01 | 86.0% | 87.3% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.70 | 55.0 | 4.26e-01 | 88.4% | 95.9% |
| 2dt8A02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.69 | 59.0 | 4.27e-01 | 100.0% | 47.7% |
| 2zihC00 | 1.10.3630.10 | Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like | 0.68 | 47.0 | 2.82e-01 | 74.4% | 11.1% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.68 | 53.0 | 4.14e-01 | 88.4% | 96.9% |
| 1h10A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 57.0 | 4.27e-01 | 100.0% | 39.3% |
| 1s7iA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.67 | 52.0 | 3.82e-01 | 88.4% | 84.7% |
| 3htxA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 53.0 | 4.45e-01 | 90.7% | 75.0% |
| 2pm6D01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.66 | 50.0 | 3.04e-01 | 83.7% | 22.9% |
| 3dfeA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 51.0 | 4.25e-01 | 90.7% | 80.5% |
| 6le1A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.65 | 47.0 | 4.03e-01 | 76.7% | 95.6% |
| 2mlgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 41.0 | 3.46e-01 | 97.7% | 36.4% |
| 1k8kC00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.65 | 50.0 | 2.99e-01 | 88.4% | 27.4% |
| 3m05B01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 48.0 | 3.89e-01 | 88.4% | 72.8% |
| 4divV01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.62 | 47.0 | 3.31e-01 | 81.4% | 47.4% |
| 3zl8A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.62 | 52.0 | 3.37e-01 | 100.0% | 20.8% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 50.0 | 4.07e-01 | 100.0% | 49.5% |
| 2lfvA00 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.61 | 47.0 | 3.70e-01 | 93.0% | 63.2% |
| 7jgsG02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 44.0 | 3.40e-01 | 79.1% | 38.8% |
| 1cnzA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.60 | 49.0 | 2.92e-01 | 93.0% | 83.7% |
| 2in3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 45.0 | 3.97e-01 | 97.7% | 95.1% |
| 2ookA00 | 3.40.50.10600 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SpoIIaa-like domains | 0.59 | 45.0 | 3.24e-01 | 83.7% | 56.8% |
| 7b1xA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 50.0 | 3.07e-01 | 100.0% | 19.7% |
| 1qmgB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 40.0 | 2.52e-01 | 72.1% | 16.7% |
| 1hfeL03 | 3.40.950.10 | Alpha Beta › 3-Layer(aba) Sandwich › Fe-only Hydrogenase (Larger Subunit); Chain L, domain 3 › Fe-only Hydrogenase (Larger Subunit); Chain L, domain 3 | 0.58 | 43.0 | 3.02e-01 | 81.4% | 52.4% |
| 1p9rA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.58 | 51.0 | 3.73e-01 | 97.7% | 70.3% |
| 3n7cA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 51.0 | 3.84e-01 | 100.0% | 41.7% |
| 3fehA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 50.0 | 3.68e-01 | 100.0% | 38.7% |
| 3s6gA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.58 | 40.0 | 2.91e-01 | 79.1% | 22.6% |
| 2e6mA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 49.0 | 3.24e-01 | 97.7% | 93.5% |
| 1b8pA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.58 | 45.0 | 3.03e-01 | 88.4% | 72.7% |
| 3tqfA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 47.0 | 3.29e-01 | 100.0% | 81.2% |
| 2cs4A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 41.0 | 3.36e-01 | 83.7% | 37.9% |
| 2xf1A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.57 | 43.0 | 3.32e-01 | 93.0% | 35.2% |
| 3k8aB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 44.0 | 3.51e-01 | 95.3% | 52.4% |
| 1obbA00 | 3.90.1820.10 | Alpha Beta › Alpha-Beta Complex › LDH C-terminal domain-like › AglA-like glucosidase | 0.56 | 49.0 | 2.78e-01 | 100.0% | 11.5% |
| 6u5vB07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.56 | 40.0 | 2.88e-01 | 76.7% | 29.5% |
| 4i9fA03 | 3.30.300.290 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.56 | 41.0 | 3.44e-01 | 81.4% | 46.8% |
| 3trkA01 | 3.90.70.110 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Alphavirus nsP2 protease domain | 0.56 | 46.0 | 3.29e-01 | 95.3% | 84.7% |
| 4on1A01 | 2.40.128.470 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 48.0 | 3.32e-01 | 95.3% | 74.1% |
| 2od0A00 | 3.30.1460.30 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone | 0.56 | 48.0 | 3.69e-01 | 100.0% | 95.1% |
| 4joiA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 40.0 | 2.87e-01 | 79.1% | 95.7% |
| 7xinA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 43.0 | 3.47e-01 | 100.0% | 84.4% |
| 3wa7A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 46.0 | 2.65e-01 | 100.0% | 16.7% |
| 1z2aA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 42.0 | 2.95e-01 | 88.4% | 86.0% |
| 1wggA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 39.0 | 3.43e-01 | 79.1% | 49.3% |
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 46.0 | 3.76e-01 | 97.7% | 74.1% |
| 5cygB00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.54 | 47.0 | 2.85e-01 | 95.3% | 15.4% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.54 | 42.0 | 3.93e-01 | 88.4% | 83.6% |
| 1zhvA00 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.53 | 43.0 | 3.21e-01 | 100.0% | 82.1% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.53 | 41.0 | 2.93e-01 | 100.0% | 46.0% |
| 2kqrA01 | 3.30.1910.20 | Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain | 0.53 | 41.0 | 3.48e-01 | 100.0% | 51.4% |
| 4hjhA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.52 | 45.0 | 3.34e-01 | 100.0% | 89.6% |
| 3l9fA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 2.95e-01 | 74.4% | 38.2% |
| 4indA01 | 2.60.120.1320 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 40.0 | 2.94e-01 | 95.3% | 76.7% |
| 1y8xB00 | 3.10.290.20 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 | 0.52 | 40.0 | 3.18e-01 | 88.4% | 45.7% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 45.0 | 3.51e-01 | 100.0% | 45.7% |
| 1i24A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 43.0 | 2.72e-01 | 100.0% | 40.3% |
| 4mtlA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 42.0 | 2.77e-01 | 100.0% | 33.7% |
| 3mweB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 43.0 | 3.04e-01 | 100.0% | 33.3% |
ECOD (73)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3331331 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.99 | 94.0 | 6.82e-01 | 100.0% | 44.0% |
| 3965886 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.99 | 83.0 | 8.16e-01 | 88.4% | 88.9% |
| 3827127 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.98 | 92.0 | 6.85e-01 | 100.0% | 46.3% |
| 3661849 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.96 | 90.0 | 7.71e-01 | 100.0% | 71.4% |
| 3334492 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.96 | 87.0 | 6.89e-01 | 100.0% | 52.5% |
| 3831192 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.95 | 88.0 | 6.84e-01 | 100.0% | 54.1% |
| 3813458 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.94 | 87.0 | 8.23e-01 | 100.0% | 92.0% |
| 3468885 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.94 | 87.0 | 6.86e-01 | 100.0% | 58.7% |
| 3380188 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.93 | 85.0 | 7.79e-01 | 100.0% | 83.6% |
| 3425673 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.92 | 77.0 | 7.30e-01 | 90.7% | 84.0% |
| 3671921 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.91 | 83.0 | 7.59e-01 | 100.0% | 81.8% |
| 3743176 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.86 | 48.0 | 3.17e-01 | 97.7% | 16.6% |
| 1937542 | 301.13.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV | 0.79 | 67.0 | 4.84e-01 | 100.0% | 45.2% |
| 4944466 | 301.13.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain | 0.77 | 66.0 | 4.81e-01 | 100.0% | 49.6% |
| 3962875 | 301.13.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV | 0.75 | 65.0 | 4.65e-01 | 100.0% | 47.7% |
| 4944239 | 301.13.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain | 0.75 | 65.0 | 4.62e-01 | 100.0% | 48.5% |
| 4944904 | 301.13.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain | 0.74 | 63.0 | 4.48e-01 | 100.0% | 45.9% |
| 3738492 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.74 | 55.0 | 4.67e-01 | 83.7% | 98.7% |
| 3281041 | 301.13.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV | 0.73 | 63.0 | 4.56e-01 | 100.0% | 47.7% |
| 1933261 | 301.13.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV | 0.73 | 63.0 | 4.60e-01 | 100.0% | 43.8% |
| 4107951 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.73 | 54.0 | 4.63e-01 | 81.4% | 94.3% |
| 5008107 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.72 | 45.0 | 3.31e-01 | 97.7% | 25.7% |
| 3959171 | 4029.1.1.0 ↗ | a+b duplicates or obligate multimers › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like | 0.72 | 56.0 | 5.75e-01 | 93.0% | 97.5% |
| 4946414 | 301.13.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain | 0.71 | 61.0 | 4.46e-01 | 100.0% | 52.0% |
| 4293539 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.71 | 59.0 | 4.86e-01 | 95.3% | 92.5% |
| 4134161 | 301.13.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV | 0.71 | 58.0 | 4.24e-01 | 100.0% | 46.7% |
| 2162577 | 301.13.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV | 0.71 | 59.0 | 4.29e-01 | 100.0% | 46.3% |
| 4344773 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.71 | 54.0 | 4.73e-01 | 88.4% | 98.6% |
| 3581101 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.70 | 49.0 | 3.26e-01 | 74.4% | 50.6% |
| 4965210 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.70 | 54.0 | 4.93e-01 | 88.4% | 83.3% |
| 4438356 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.69 | 55.0 | 4.68e-01 | 90.7% | 93.3% |
| 3236988 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.69 | 56.0 | 4.58e-01 | 90.7% | 100.0% |
| 4126985 | 301.13.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV | 0.69 | 59.0 | 4.28e-01 | 100.0% | 50.0% |
| 3299580 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.68 | 59.0 | 5.21e-01 | 100.0% | 69.2% |
| 3319893 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.68 | 60.0 | 4.54e-01 | 100.0% | 43.0% |
| 5055913 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.68 | 52.0 | 3.98e-01 | 88.4% | 60.9% |
| 3678841 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.67 | 59.0 | 4.75e-01 | 100.0% | 51.8% |
| 3299579 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.66 | 57.0 | 4.93e-01 | 100.0% | 67.1% |
| 4981961 | 101.1.2.819 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27231 | 0.66 | 45.0 | 3.05e-01 | 72.1% | 26.2% |
| 3213706 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.64 | 50.0 | 3.25e-01 | 90.7% | 18.2% |
| 3214873 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.64 | 53.0 | 3.54e-01 | 97.7% | 41.1% |
| 4343880 | 304.28.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG | 0.64 | 48.0 | 4.13e-01 | 93.0% | 87.1% |
| 3808578 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.64 | 44.0 | 3.69e-01 | 72.1% | 73.0% |
| 4116186 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.64 | 44.0 | 2.84e-01 | 72.1% | 19.5% |
| 4986859 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.64 | 50.0 | 3.15e-01 | 97.7% | 28.5% |
| 3209287 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.60 | 51.0 | 3.01e-01 | 100.0% | 57.0% |
| 2755642 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.59 | 45.0 | 3.02e-01 | 93.0% | 42.8% |
| 3931122 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 48.0 | 3.80e-01 | 100.0% | 43.2% |
| 5074130 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.58 | 49.0 | 3.02e-01 | 93.0% | 50.2% |
| 4973804 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 44.0 | 3.82e-01 | 100.0% | 52.0% |
| 4437052 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.57 | 49.0 | 3.36e-01 | 97.7% | 57.3% |
| 3968902 | 2006.1.6.15 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 | 0.57 | 45.0 | 2.93e-01 | 100.0% | 31.7% |
| 4541289 | 2002.1.1.154 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_1 | 0.56 | 47.0 | 2.79e-01 | 100.0% | 22.9% |
| 4505972 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.56 | 46.0 | 2.84e-01 | 97.7% | 18.8% |
| 4585964 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.56 | 44.0 | 2.92e-01 | 88.4% | 67.4% |
| 72187 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.56 | 43.0 | 3.44e-01 | 88.4% | 91.7% |
| 5002836 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.55 | 44.0 | 2.68e-01 | 100.0% | 11.2% |
| 3970771 | 3009.1.1.0 ↗ | alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like | 0.55 | 47.0 | 3.07e-01 | 100.0% | 42.1% |
| 3466238 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.55 | 45.0 | 2.59e-01 | 93.0% | 33.3% |
| 4088600 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.55 | 42.0 | 3.63e-01 | 100.0% | 77.6% |
| 3700687 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.54 | 49.0 | 2.98e-01 | 100.0% | 54.1% |
| 4521212 | 2498.2.1.8 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › PF29164 | 0.54 | 46.0 | 3.22e-01 | 100.0% | 36.7% |
| 3474254 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.54 | 45.0 | 3.27e-01 | 100.0% | 33.3% |
| 4483596 | 2007.6.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › PGI | 0.54 | 46.0 | 2.87e-01 | 100.0% | 30.6% |
| 4471547 | 10.12.1.25 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PhyH | 0.53 | 42.0 | 2.72e-01 | 90.7% | 66.0% |
| 3494392 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.53 | 43.0 | 2.56e-01 | 90.7% | 50.3% |
| 4923381 | 304.51.1.6 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cmr3 | 0.53 | 41.0 | 2.88e-01 | 97.7% | 87.0% |
| 3710998 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 45.0 | 2.56e-01 | 100.0% | 62.3% |
| 5021137 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.52 | 39.0 | 2.37e-01 | 93.0% | 10.5% |
| 4081606 | 6094.1.1.0 ↗ | a+b two layers › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase | 0.51 | 39.0 | 3.19e-01 | 86.0% | 47.1% |
| 5028281 | 2007.1.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like | 0.51 | 43.0 | 2.98e-01 | 100.0% | 68.8% |
| 3234976 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.50 | 44.0 | 3.24e-01 | 100.0% | 38.2% |
| 3924444 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.50 | 44.0 | 2.56e-01 | 100.0% | 12.6% |
D2
medium
residues 57-125
Domain cluster:
rep: MW960032.1__QWY83295.1__X__00089__D170-241
CATH (52)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gccA00 | 3.30.730.10 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain | 0.92 | 63.0 | 6.62e-01 | 71.0% | 84.1% |
| 2bn8A00 | 3.30.730.20 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › Cell division activator CedA | 0.78 | 55.0 | 5.65e-01 | 79.7% | 76.1% |
| 2yt4A03 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.69 | 47.0 | 4.15e-01 | 91.3% | 47.1% |
| 4a2bA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.67 | 50.0 | 4.54e-01 | 91.3% | 58.9% |
| 1whnA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 48.0 | 4.30e-01 | 94.2% | 54.5% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.65 | 45.0 | 3.89e-01 | 88.4% | 44.7% |
| 1mgpA02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.65 | 53.0 | 4.35e-01 | 88.4% | 50.4% |
| 2j3tD01 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.64 | 44.0 | 3.56e-01 | 71.0% | 44.8% |
| 2l2mA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 50.0 | 5.02e-01 | 92.8% | 85.7% |
| 2wdtC02 | 3.30.1490.420 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 | 0.64 | 44.0 | 3.91e-01 | 91.3% | 49.5% |
| 2l2nA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 50.0 | 5.01e-01 | 91.3% | 83.1% |
| 3nyiA02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.63 | 52.0 | 4.17e-01 | 91.3% | 52.6% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 53.0 | 4.71e-01 | 95.7% | 75.2% |
| 1u7zC00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.62 | 49.0 | 3.51e-01 | 88.4% | 95.0% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 45.0 | 4.00e-01 | 92.8% | 52.4% |
| 2dixA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 47.0 | 4.60e-01 | 94.2% | 75.6% |
| 7d27A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.61 | 51.0 | 3.59e-01 | 95.7% | 31.3% |
| 1gqyB02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.60 | 52.0 | 3.70e-01 | 97.1% | 31.8% |
| 1e8cA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.60 | 51.0 | 3.55e-01 | 95.7% | 32.4% |
| 2mdrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 46.0 | 4.22e-01 | 92.8% | 62.8% |
| 4qdiA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.60 | 51.0 | 3.57e-01 | 100.0% | 29.3% |
| 3zm6A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.59 | 49.0 | 3.48e-01 | 95.7% | 28.7% |
| 4c12A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.59 | 51.0 | 3.55e-01 | 98.6% | 29.4% |
| 2khxA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 47.0 | 4.57e-01 | 91.3% | 78.5% |
| 8f5dA05 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.59 | 51.0 | 3.63e-01 | 100.0% | 33.0% |
| 4hbrA00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 43.0 | 3.45e-01 | 78.3% | 60.7% |
| 3u12A00 | 2.30.29.180 | Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain | 0.58 | 40.0 | 3.61e-01 | 88.4% | 49.0% |
| 3zl8A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.58 | 49.0 | 3.47e-01 | 97.1% | 29.2% |
| 1x47A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 42.0 | 4.00e-01 | 89.9% | 64.4% |
| 1pzxA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.58 | 47.0 | 3.96e-01 | 91.3% | 95.9% |
| 1fgsA01 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.57 | 49.0 | 3.27e-01 | 97.1% | 24.6% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 36.0 | 3.80e-01 | 95.7% | 72.1% |
| 3wxmB02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.57 | 44.0 | 3.69e-01 | 85.5% | 52.5% |
| 3u1wA01 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 46.0 | 3.47e-01 | 92.8% | 88.0% |
| 1vw4502 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 45.0 | 4.12e-01 | 92.8% | 66.3% |
| 2dt8A02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.56 | 46.0 | 3.77e-01 | 91.3% | 54.6% |
| 3htxA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 43.0 | 4.19e-01 | 84.1% | 84.2% |
| 3agkA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.56 | 44.0 | 3.64e-01 | 85.5% | 54.0% |
| 3n7cA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 39.0 | 3.36e-01 | 87.0% | 47.2% |
| 5eoxB03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 44.0 | 3.66e-01 | 88.4% | 75.0% |
| 3wkmB01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.55 | 35.0 | 3.20e-01 | 88.4% | 46.8% |
| 6phxA01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.55 | 42.0 | 2.78e-01 | 84.1% | 58.6% |
| 4fr9A00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 42.0 | 3.37e-01 | 84.1% | 57.4% |
| 5jowA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 44.0 | 3.25e-01 | 92.8% | 56.0% |
| 1k8kC00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 46.0 | 2.99e-01 | 100.0% | 33.1% |
| 7t8tA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 43.0 | 3.49e-01 | 87.0% | 51.1% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 43.0 | 3.90e-01 | 92.8% | 72.2% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.52 | 37.0 | 3.39e-01 | 76.8% | 71.4% |
| 2ivdB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 42.0 | 3.27e-01 | 92.8% | 100.0% |
| 3wirA03 | 2.60.420.10 | Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 | 0.52 | 34.0 | 3.46e-01 | 100.0% | 68.1% |
| 2qa1A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 42.0 | 2.82e-01 | 94.2% | 47.1% |
| 2l33A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 41.0 | 3.77e-01 | 91.3% | 71.4% |
ECOD (78)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3331331 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.88 | 68.0 | 5.88e-01 | 81.2% | 85.0% |
| 3827127 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.85 | 65.0 | 5.76e-01 | 79.7% | 87.4% |
| 3334492 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.84 | 67.0 | 6.29e-01 | 82.6% | 95.0% |
| 3227023 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.69 | 50.0 | 3.64e-01 | 91.3% | 28.1% |
| 5020788 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.68 | 46.0 | 4.73e-01 | 88.4% | 73.8% |
| 3333293 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.68 | 49.0 | 4.78e-01 | 92.8% | 70.7% |
| 3299580 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.67 | 50.0 | 5.13e-01 | 88.4% | 83.1% |
| 3408303 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.67 | 50.0 | 4.73e-01 | 87.0% | 67.5% |
| 3722269 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.67 | 49.0 | 4.94e-01 | 92.8% | 78.6% |
| 1937542 | 301.13.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV | 0.65 | 52.0 | 4.26e-01 | 87.0% | 50.8% |
| 3253472 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.65 | 50.0 | 4.70e-01 | 92.8% | 68.2% |
| 3209385 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.65 | 45.0 | 4.65e-01 | 94.2% | 78.5% |
| 3514664 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.64 | 46.0 | 4.41e-01 | 91.3% | 66.3% |
| 3209694 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.64 | 46.0 | 4.20e-01 | 92.8% | 55.0% |
| 1937228 | 301.13.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV | 0.63 | 52.0 | 4.15e-01 | 89.9% | 51.9% |
| 3678841 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.63 | 48.0 | 4.49e-01 | 89.9% | 65.9% |
| 3825518 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.63 | 46.0 | 4.53e-01 | 92.8% | 73.3% |
| 3319893 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.63 | 47.0 | 4.18e-01 | 91.3% | 55.0% |
| 3213706 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.62 | 42.0 | 3.00e-01 | 87.0% | 21.8% |
| 3456246 | 330.1.1.19 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 | 0.62 | 49.0 | 4.48e-01 | 84.1% | 75.6% |
| 3839226 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.62 | 49.0 | 3.51e-01 | 94.2% | 27.6% |
| 3815823 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.62 | 49.0 | 4.54e-01 | 92.8% | 66.7% |
| 3839169 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.61 | 47.0 | 3.31e-01 | 84.1% | 58.3% |
| 4134161 | 301.13.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV | 0.61 | 49.0 | 3.97e-01 | 88.4% | 51.9% |
| 4944904 | 301.13.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain | 0.61 | 50.0 | 4.02e-01 | 89.9% | 54.1% |
| 3245175 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.61 | 47.0 | 4.26e-01 | 89.9% | 61.1% |
| 4251276 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.61 | 52.0 | 3.55e-01 | 95.7% | 29.0% |
| 4944239 | 301.13.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain | 0.61 | 50.0 | 4.09e-01 | 91.3% | 54.6% |
| 4056032 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.61 | 51.0 | 3.64e-01 | 95.7% | 30.9% |
| 4040094 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.61 | 53.0 | 3.73e-01 | 97.1% | 32.1% |
| 3400046 | 219.1.1.9 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 | 0.60 | 49.0 | 3.50e-01 | 92.8% | 69.8% |
| 3653274 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.60 | 45.0 | 4.30e-01 | 92.8% | 68.2% |
| 3388095 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.60 | 46.0 | 3.36e-01 | 82.6% | 55.6% |
| 4075794 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.60 | 52.0 | 3.67e-01 | 97.1% | 32.1% |
| 3614289 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 43.0 | 2.68e-01 | 87.0% | 12.8% |
| 3616729 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.60 | 44.0 | 3.92e-01 | 95.7% | 53.8% |
| 4324652 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.60 | 47.0 | 3.32e-01 | 92.8% | 26.7% |
| 4232295 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.60 | 50.0 | 3.58e-01 | 95.7% | 32.3% |
| 3929384 | 219.1.1.9 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 | 0.59 | 47.0 | 3.40e-01 | 91.3% | 69.8% |
| 3480250 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.59 | 43.0 | 4.04e-01 | 94.2% | 61.1% |
| 4450167 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.59 | 50.0 | 3.45e-01 | 97.1% | 27.8% |
| 4165734 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.59 | 52.0 | 3.57e-01 | 100.0% | 30.4% |
| 4251813 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.59 | 50.0 | 3.67e-01 | 97.1% | 34.0% |
| 4068244 | 2484.1.1.49 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N | 0.59 | 43.0 | 3.33e-01 | 87.0% | 35.3% |
| 4946414 | 301.13.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain | 0.59 | 48.0 | 3.97e-01 | 89.9% | 57.7% |
| 3709800 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 42.0 | 3.83e-01 | 89.9% | 55.8% |
| 4973804 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 37.0 | 3.61e-01 | 87.0% | 58.7% |
| 2162577 | 301.13.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV | 0.58 | 48.0 | 3.91e-01 | 91.3% | 53.0% |
| 3323400 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 45.0 | 3.73e-01 | 85.5% | 47.5% |
| 3402001 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.58 | 43.0 | 4.02e-01 | 97.1% | 62.2% |
| 3987293 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.58 | 48.0 | 3.44e-01 | 92.8% | 29.5% |
| 1106390 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.58 | 49.0 | 3.54e-01 | 97.1% | 31.6% |
| None | — | 0.58 | 49.0 | 3.17e-01 | 100.0% | 82.6% | |
| 3669022 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.58 | 44.0 | 4.08e-01 | 92.8% | 62.1% |
| 4532721 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.58 | 50.0 | 3.62e-01 | 100.0% | 33.5% |
| 3481288 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 46.0 | 3.95e-01 | 89.9% | 57.4% |
| 3299579 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.57 | 46.0 | 4.59e-01 | 92.8% | 88.6% |
| 3348638 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.57 | 45.0 | 3.87e-01 | 92.8% | 52.2% |
| 103012 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.57 | 49.0 | 3.25e-01 | 97.1% | 23.6% |
| 5047389 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 45.0 | 3.74e-01 | 88.4% | 59.2% |
| 3750640 | 220.1.1.38 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N | 0.57 | 40.0 | 3.48e-01 | 88.4% | 46.4% |
| 3207467 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.57 | 46.0 | 3.65e-01 | 91.3% | 48.4% |
| 3934407 | 330.1.1.10 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 | 0.57 | 46.0 | 3.87e-01 | 98.6% | 50.4% |
| 4458319 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.57 | 47.0 | 3.40e-01 | 95.7% | 31.8% |
| 3877924 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.57 | 45.0 | 4.30e-01 | 92.8% | 72.9% |
| 3627778 | 220.1.1.64 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII | 0.56 | 39.0 | 3.47e-01 | 87.0% | 50.0% |
| 380523 | 219.1.1.9 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 | 0.56 | 45.0 | 3.32e-01 | 92.8% | 67.0% |
| 3275633 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.55 | 49.0 | 3.18e-01 | 100.0% | 45.1% |
| 3890418 | 220.1.1.38 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N | 0.55 | 38.0 | 3.39e-01 | 88.4% | 47.6% |
| 4542899 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 43.0 | 3.33e-01 | 89.9% | 81.8% |
| 3692799 | 2003.1.2.65 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, Pyr_redox_3 | 0.54 | 44.0 | 2.72e-01 | 100.0% | 78.0% |
| 3989004 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.53 | 39.0 | 2.66e-01 | 84.1% | 52.3% |
| 4038287 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.53 | 47.0 | 3.79e-01 | 100.0% | 85.9% |
| 5061930 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 37.0 | 3.38e-01 | 87.0% | 53.7% |
| 3832602 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.52 | 42.0 | 3.70e-01 | 92.8% | 62.7% |
| 4483961 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.52 | 44.0 | 3.37e-01 | 94.2% | 93.9% |
| 4550958 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.52 | 33.0 | 2.86e-01 | 95.7% | 38.9% |
| 3271615 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 40.0 | 2.51e-01 | 89.9% | 30.2% |