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NC_028838.1__YP_009202017.1__PHICD506_20030__00030
Bact-VirNC_028838.1__YP_009202017.1__PHICD506_20030__00030
Identity
- Accession:
- NC_028838 ↗
- Kingdom:
- phage
Quality
96.7
mean pLDDT
Taxonomy
TaxID: 1582155
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-95
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tiiA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.62 | 36.0 | 4.09e-01 | 97.8% | 78.5% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.62 | 54.0 | 5.09e-01 | 100.0% | 79.6% |
| 2j7qA00 | 3.90.70.120 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.61 | 45.0 | 3.35e-01 | 77.8% | 84.0% |
| 2faoA01 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.57 | 51.0 | 3.58e-01 | 100.0% | 44.0% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 31.0 | 2.91e-01 | 90.0% | 42.2% |
| 1xffA00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.56 | 42.0 | 3.18e-01 | 81.1% | 58.8% |
| 2iruA02 | 3.30.70.3300 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 48.0 | 4.23e-01 | 100.0% | 88.4% |
| 1bd3A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 35.0 | 2.64e-01 | 77.8% | 26.8% |
| 4bkwA03 | 3.30.500.40 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.52 | 38.0 | 3.41e-01 | 76.7% | 58.7% |
| 1nqzA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 39.0 | 3.31e-01 | 85.6% | 97.7% |
| 2a2jA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 36.0 | 2.85e-01 | 74.4% | 84.2% |
| 1ckmA01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.50 | 38.0 | 3.23e-01 | 82.2% | 67.7% |
| 2l72A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.50 | 39.0 | 3.59e-01 | 84.4% | 78.8% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4498285 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.69 | 35.0 | 3.52e-01 | 75.6% | 46.3% |
| 3687261 | 3409.1.1.3 ↗ | a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › ATG14 | 0.62 | 36.0 | 2.74e-01 | 97.8% | 24.8% |
| 3989004 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.62 | 45.0 | 3.06e-01 | 76.7% | 54.5% |
| 3461521 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.62 | 45.0 | 4.09e-01 | 75.6% | 61.7% |
| 3940997 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.62 | 35.0 | 3.10e-01 | 95.6% | 37.0% |
| 4842242 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.60 | 45.0 | 2.97e-01 | 77.8% | 51.3% |
| 3337688 | 241.6.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits | 0.57 | 50.0 | 4.40e-01 | 98.9% | 93.3% |
| 4360456 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.56 | 47.0 | 4.16e-01 | 95.6% | 63.8% |
| 3962048 | 227.1.1.15 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PF26035 | 0.56 | 44.0 | 4.34e-01 | 92.2% | 79.0% |
| 5078886 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.56 | 35.0 | 3.31e-01 | 72.2% | 50.9% |
| 3943949 | 3355.1.1.16 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DcuC | 0.56 | 45.0 | 2.93e-01 | 91.1% | 97.4% |
| 3613887 | 2011.1.1.17 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › DUF2817 | 0.56 | 48.0 | 3.19e-01 | 98.9% | 90.1% |
| 4350848 | 304.150.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA | 0.55 | 44.0 | 4.33e-01 | 85.6% | 89.5% |
| 3482328 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.55 | 32.0 | 3.08e-01 | 85.6% | 49.5% |
| 3593119 | 3351.1.1.0 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 | 0.54 | 44.0 | 3.97e-01 | 91.1% | 80.8% |
| 4385740 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 40.0 | 3.82e-01 | 98.9% | 68.6% |
| 4060407 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.53 | 46.0 | 4.06e-01 | 97.8% | 94.8% |
| 3168821 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.52 | 44.0 | 3.09e-01 | 95.6% | 45.8% |
| 1117716 | 3680.1.1.1 ↗ | a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › SARA_C | 0.52 | 38.0 | 3.41e-01 | 76.7% | 58.7% |
| 4994637 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 38.0 | 3.69e-01 | 75.6% | 95.0% |
| 3500262 | 7579.1.1.3 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 | 0.52 | 45.0 | 3.10e-01 | 100.0% | 70.3% |
| 3254772 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.51 | 42.0 | 3.27e-01 | 92.2% | 59.1% |
| 3246576 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.51 | 40.0 | 2.80e-01 | 84.4% | 61.7% |
| 3890428 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.51 | 30.0 | 2.47e-01 | 98.9% | 28.3% |
| 4585224 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.51 | 38.0 | 3.78e-01 | 81.1% | 94.9% |
| 4352332 | 3283.1.1.1 ↗ | a+b two layers › Nitrogen fixation protein › Nitrogen fixation protein › Nitrogen fixation protein › DUF269 | 0.51 | 45.0 | 3.92e-01 | 100.0% | 95.0% |
| 3388233 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.50 | 42.0 | 3.08e-01 | 97.8% | 97.3% |
| 3538582 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.50 | 40.0 | 3.34e-01 | 92.2% | 62.8% |