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NC_028841.1__YP_009202246.1__AVV24_gp40__00040
Bact-VirNC_028841.1__YP_009202246.1__AVV24_gp40__00040
Identity
- Accession:
- NC_028841 ↗
- Kingdom:
- phage
Quality
82.4
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 51-168
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.77 | 40.0 | 5.35e-01 | 85.6% | 95.2% |
| 1of5B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.75 | 61.0 | 5.96e-01 | 86.4% | 93.0% |
| 3lygA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.74 | 61.0 | 6.14e-01 | 87.3% | 91.7% |
| 2jq5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.73 | 59.0 | 5.79e-01 | 98.3% | 78.9% |
| 3nv0B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.72 | 58.0 | 5.58e-01 | 85.6% | 85.3% |
| 3cnxA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.72 | 59.0 | 5.55e-01 | 85.6% | 92.0% |
| 4hz9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.71 | 60.0 | 5.99e-01 | 89.8% | 97.6% |
| 7c5wA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.70 | 56.0 | 5.21e-01 | 84.7% | 98.0% |
| 2rgqB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.70 | 57.0 | 5.49e-01 | 86.4% | 88.7% |
| 2a15A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.69 | 57.0 | 5.50e-01 | 87.3% | 91.7% |
| 2r4iA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 55.0 | 5.44e-01 | 85.6% | 92.7% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 54.0 | 5.28e-01 | 85.6% | 92.2% |
| 4r1kB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 58.0 | 5.56e-01 | 93.2% | 91.9% |
| 5aigA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 55.0 | 5.48e-01 | 87.3% | 91.1% |
| 3ecfA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 54.0 | 5.30e-01 | 85.6% | 80.5% |
| 3blzA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 54.0 | 5.39e-01 | 86.4% | 90.3% |
| 3f14A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 55.0 | 5.64e-01 | 86.4% | 95.5% |
| 3er7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 54.0 | 5.41e-01 | 89.8% | 95.1% |
| 3ebtA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 53.0 | 5.14e-01 | 87.3% | 90.8% |
| 3kspA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 51.0 | 5.04e-01 | 85.6% | 89.1% |
| 5evhA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 51.0 | 5.15e-01 | 87.3% | 86.0% |
| 1v2bB00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.63 | 44.0 | 4.07e-01 | 98.3% | 56.3% |
| 1jkfA03 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.62 | 31.0 | 4.10e-01 | 77.1% | 91.7% |
| 3ke7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 53.0 | 5.09e-01 | 91.5% | 85.7% |
| 1tu1A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.60 | 40.0 | 3.77e-01 | 96.6% | 55.6% |
| 3q90B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 52.0 | 5.05e-01 | 94.9% | 90.0% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 52.0 | 4.94e-01 | 100.0% | 94.4% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.57 | 41.0 | 3.68e-01 | 99.2% | 51.8% |
| 3nqzA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 37.0 | 4.25e-01 | 86.4% | 92.9% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.55 | 46.0 | 3.76e-01 | 89.8% | 86.4% |
| 3lydA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.53 | 38.0 | 3.61e-01 | 98.3% | 62.0% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.53 | 45.0 | 3.58e-01 | 92.4% | 86.8% |
| 2joxA00 | 2.60.40.4240 | Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill | 0.52 | 32.0 | 3.43e-01 | 82.2% | 68.9% |
| 1lc0A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 35.0 | 3.30e-01 | 89.0% | 56.5% |
| 3zpmA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.51 | 41.0 | 3.41e-01 | 88.1% | 75.8% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992847 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.83 | 46.0 | 5.79e-01 | 84.7% | 88.0% |
| 4940923 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.76 | 42.0 | 5.12e-01 | 85.6% | 82.5% |
| 4460572 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.74 | 60.0 | 5.83e-01 | 85.6% | 80.8% |
| 138908 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.74 | 61.0 | 6.15e-01 | 87.3% | 91.7% |
| 4927976 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.71 | 58.0 | 5.72e-01 | 86.4% | 96.8% |
| 4540639 | 243.1.1.5 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Tim44 | 0.70 | 55.0 | 5.36e-01 | 83.1% | 82.3% |
| 3184149 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.70 | 56.0 | 5.39e-01 | 85.6% | 88.1% |
| 3281821 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.69 | 57.0 | 5.50e-01 | 86.4% | 94.6% |
| 3735183 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.69 | 56.0 | 5.52e-01 | 86.4% | 94.4% |
| 4978484 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.68 | 56.0 | 5.45e-01 | 87.3% | 85.4% |
| 3244404 | 243.1.1.28 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 | 0.68 | 54.0 | 5.38e-01 | 85.6% | 92.7% |
| 3282929 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.66 | 54.0 | 5.39e-01 | 86.4% | 93.3% |
| 3283292 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.66 | 55.0 | 5.39e-01 | 90.7% | 97.7% |
| 4951451 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.66 | 46.0 | 4.26e-01 | 95.8% | 57.9% |
| 3254046 | 243.1.1.9 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF1348 | 0.66 | 53.0 | 4.83e-01 | 85.6% | 71.4% |
| 3219090 | 243.1.1.47 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5390 | 0.66 | 52.0 | 5.16e-01 | 83.9% | 94.3% |
| 3437773 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.65 | 51.0 | 5.16e-01 | 100.0% | 83.5% |
| 3948878 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.65 | 57.0 | 5.60e-01 | 94.9% | 96.8% |
| 3217509 | 243.1.1.46 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382 | 0.65 | 52.0 | 4.81e-01 | 86.4% | 86.7% |
| 4545659 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.64 | 40.0 | 4.68e-01 | 85.6% | 96.0% |
| 6400 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.64 | 55.0 | 5.54e-01 | 93.2% | 99.2% |
| 3427022 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.64 | 42.0 | 4.46e-01 | 94.9% | 78.0% |
| 3678591 | 243.3.1.12 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI | 0.64 | 42.0 | 4.69e-01 | 94.9% | 87.8% |
| 3273247 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.63 | 45.0 | 4.11e-01 | 97.5% | 57.3% |
| 5058112 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.63 | 43.0 | 3.99e-01 | 96.6% | 55.4% |
| 3961916 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.63 | 50.0 | 5.13e-01 | 86.4% | 95.7% |
| 5028935 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.63 | 36.0 | 4.39e-01 | 85.6% | 92.9% |
| 3744079 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.62 | 52.0 | 5.16e-01 | 91.5% | 98.4% |
| 4059480 | 881.1.1.37 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF27270 | 0.62 | 42.0 | 3.66e-01 | 97.5% | 46.3% |
| 4011330 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.62 | 50.0 | 4.79e-01 | 86.4% | 86.7% |
| 3446904 | 243.3.1.12 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI | 0.62 | 41.0 | 4.57e-01 | 94.9% | 87.8% |
| 3217156 | 243.1.1.46 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382 | 0.62 | 49.0 | 4.65e-01 | 85.6% | 91.4% |
| 3474450 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.61 | 53.0 | 5.21e-01 | 94.9% | 88.8% |
| 4987012 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.61 | 41.0 | 3.80e-01 | 96.6% | 54.0% |
| 3248518 | 243.1.1.12 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 | 0.61 | 49.0 | 4.84e-01 | 90.7% | 81.3% |
| 5068089 | 283.1.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase | 0.60 | 35.0 | 3.61e-01 | 77.1% | 58.3% |
| 5045102 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.60 | 35.0 | 3.85e-01 | 87.3% | 70.5% |
| 3783000 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.59 | 37.0 | 4.04e-01 | 85.6% | 76.8% |
| 5069097 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.58 | 34.0 | 3.44e-01 | 87.3% | 55.8% |
| 5040360 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.58 | 44.0 | 4.85e-01 | 98.3% | 98.9% |
| 3412551 | 4.1.1.326 ↗ | beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 | 0.57 | 29.0 | 3.60e-01 | 85.6% | 78.4% |
| 5048351 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.57 | 48.0 | 4.48e-01 | 92.4% | 89.7% |
| 3559952 | 71.2.1.4 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N | 0.56 | 48.0 | 3.78e-01 | 91.5% | 98.3% |
| 3818565 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.56 | 42.0 | 3.85e-01 | 98.3% | 60.0% |
| 3287572 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.55 | 42.0 | 3.48e-01 | 78.8% | 74.9% |
| 386453 | 881.1.1.6 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN | 0.54 | 38.0 | 3.46e-01 | 72.9% | 85.0% |
| 5041496 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.54 | 46.0 | 3.54e-01 | 94.1% | 93.1% |
| 3415714 | 79.1.1.23 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Chitin_bind_4 | 0.54 | 29.0 | 3.52e-01 | 85.6% | 81.3% |
| 4672378 | 71.1.1.1 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin | 0.53 | 44.0 | 3.79e-01 | 89.0% | 87.6% |
| 4265807 | 77.1.1.4 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Chitin_bind_4 | 0.53 | 27.0 | 3.40e-01 | 85.6% | 81.4% |
| None | — | 0.52 | 43.0 | 3.77e-01 | 89.8% | 88.9% | |
| 5022396 | 3459.1.1.0 ↗ | beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule | 0.52 | 34.0 | 4.04e-01 | 99.2% | 98.8% |
| 3713198 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.51 | 42.0 | 3.85e-01 | 87.3% | 68.4% |
| 4088781 | 12.3.1.6 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N | 0.51 | 41.0 | 3.56e-01 | 86.4% | 58.3% |
| 3494784 | 5.1.4.265 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR3_1st | 0.50 | 44.0 | 3.07e-01 | 97.5% | 32.9% |