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NC_028841.1__YP_009202261.1__AVV24_gp55__00055

Bact-Vir

NC_028841.1__YP_009202261.1__AVV24_gp55__00055

Identity

Accession:
NC_028841 ↗
Kingdom:
phage

Quality

79.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lilyvirus› Bacteriophage_Lily

TaxID: 1589751

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-56
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 67.0 6.36e-01 100.0% 76.6%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 68.0 6.65e-01 98.2% 100.0%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 68.0 5.25e-01 100.0% 47.1%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 67.0 6.29e-01 100.0% 88.2%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 69.0 6.53e-01 100.0% 85.9%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 68.0 6.23e-01 100.0% 80.0%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 65.0 5.92e-01 100.0% 74.3%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 67.0 6.52e-01 100.0% 93.3%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 68.0 6.38e-01 100.0% 84.8%
2m0yA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 65.0 5.92e-01 100.0% 75.7%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 57.0 5.98e-01 96.4% 100.0%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 65.0 6.08e-01 100.0% 86.6%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 63.0 6.16e-01 100.0% 93.2%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 58.0 5.76e-01 100.0% 89.5%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 54.0 5.09e-01 100.0% 69.0%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 54.0 5.01e-01 100.0% 68.1%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 4.85e-01 100.0% 69.1%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 4.68e-01 100.0% 68.2%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 56.0 5.23e-01 100.0% 81.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 4.81e-01 96.4% 78.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 46.0 4.68e-01 100.0% 80.4%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.63 54.0 5.21e-01 100.0% 88.9%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 4.94e-01 100.0% 85.5%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.03e-01 100.0% 51.1%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.62 53.0 4.00e-01 100.0% 51.7%
2v90C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.61 46.0 3.93e-01 83.6% 74.2%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.64e-01 100.0% 72.9%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.40e-01 100.0% 66.2%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 38.0 3.64e-01 100.0% 51.5%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.60 44.0 4.46e-01 100.0% 85.2%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 46.0 4.43e-01 87.3% 74.2%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 46.0 4.42e-01 87.3% 73.1%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 48.0 4.68e-01 100.0% 85.5%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.25e-01 100.0% 86.0%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 3.95e-01 100.0% 79.7%
2ls0101 2.40.50.670 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Target recognition domain of lytic exoenzyme 0.58 47.0 3.94e-01 100.0% 93.0%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 43.0 4.36e-01 94.5% 85.7%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 45.0 4.46e-01 89.1% 80.3%
1w94A00 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.57 44.0 3.28e-01 87.3% 97.4%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 42.0 3.72e-01 92.7% 93.2%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.51 40.0 3.32e-01 96.4% 78.8%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.29e-01 98.2% 63.0%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.50 38.0 3.76e-01 94.5% 82.0%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4960540 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 70.0 6.66e-01 100.0% 87.7%
4376886 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.78 69.0 6.12e-01 100.0% 83.7%
3530247 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 70.0 6.63e-01 100.0% 87.7%
3590425 4.1.1.37 ↗ beta barrels › SH3 › SH3 › SH3 › YjdM 0.77 66.0 6.12e-01 96.4% 75.7%
3725260 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 70.0 6.44e-01 100.0% 80.0%
3235419 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 66.0 6.42e-01 100.0% 88.3%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 68.0 6.60e-01 100.0% 93.3%
3936225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 68.0 6.26e-01 100.0% 81.4%
3482683 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 67.0 6.53e-01 100.0% 90.0%
3905176 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 69.0 6.49e-01 100.0% 86.2%
3529708 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 67.0 6.05e-01 100.0% 74.7%
537 4.1.1.37 ↗ beta barrels › SH3 › SH3 › SH3 › YjdM 0.75 65.0 5.97e-01 100.0% 76.4%
3480350 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 66.0 6.25e-01 100.0% 83.1%
3576443 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 67.0 6.21e-01 100.0% 90.0%
3793311 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 65.0 6.33e-01 98.2% 95.0%
3843554 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.74 67.0 6.19e-01 100.0% 80.0%
3495480 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 65.0 6.35e-01 100.0% 90.0%
3616622 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 65.0 6.24e-01 100.0% 90.5%
3165077 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.73 63.0 5.86e-01 98.2% 87.1%
5000308 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.73 55.0 5.76e-01 100.0% 93.9%
3625555 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 61.0 6.11e-01 94.5% 100.0%
3500084 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 5.93e-01 100.0% 90.0%
3627275 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 6.28e-01 100.0% 98.3%
3575066 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 63.0 6.19e-01 98.2% 96.7%
3294025 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 59.0 5.99e-01 90.9% 98.2%
3660964 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.71 56.0 4.68e-01 100.0% 49.0%
5034724 4.1.1.482 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4314 0.71 58.0 5.87e-01 92.7% 92.7%
3900236 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 63.0 6.15e-01 100.0% 93.3%
4629735 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 57.0 5.43e-01 100.0% 76.9%
3216746 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 61.0 6.17e-01 98.2% 98.2%
4025829 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 54.0 5.47e-01 100.0% 87.3%
4888987 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.70 54.0 5.13e-01 100.0% 71.0%
3751502 4.1.1.365 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_KIN17_C 0.69 56.0 5.23e-01 98.2% 71.4%
3780847 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.69 54.0 4.05e-01 100.0% 33.3%
4268386 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 53.0 4.99e-01 100.0% 68.6%
4542692 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 57.0 5.04e-01 100.0% 71.8%
3308545 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.67 52.0 3.70e-01 96.4% 28.7%
4405469 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.66 54.0 4.73e-01 100.0% 62.1%
4034031 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.66 59.0 5.58e-01 100.0% 87.7%
3503291 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.66 50.0 4.04e-01 100.0% 41.8%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 54.0 5.05e-01 100.0% 72.9%
3581336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 56.0 4.59e-01 100.0% 50.9%
3688068 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.65 55.0 4.14e-01 100.0% 48.0%
3313403 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.65 47.0 4.74e-01 83.6% 76.4%
3376597 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 5.00e-01 90.9% 95.6%
3742938 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.64 52.0 5.02e-01 100.0% 80.0%
3992514 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 42.0 4.65e-01 70.9% 92.5%
3248395 4.1.1.232 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Tf2-1 0.64 55.0 5.07e-01 100.0% 84.0%
3852545 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.54e-01 100.0% 75.0%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.81e-01 100.0% 72.9%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 5.07e-01 100.0% 86.7%
3398496 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.63 46.0 4.61e-01 100.0% 83.6%
3550644 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.65e-01 100.0% 83.6%
3514556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.62e-01 100.0% 71.4%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.62 50.0 4.84e-01 100.0% 81.5%
4874733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.56e-01 100.0% 85.2%
3933539 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.82e-01 100.0% 81.5%
3880422 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.59 47.0 4.40e-01 87.3% 72.1%
3903728 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 48.0 4.08e-01 96.4% 86.0%
3841414 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 47.0 4.46e-01 100.0% 74.3%
3934192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.69e-01 100.0% 86.7%
3317821 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 51.0 4.60e-01 98.2% 86.7%
3473499 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 3.91e-01 100.0% 48.7%
5041849 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.56 43.0 4.32e-01 94.5% 89.1%
3025760 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.54 43.0 3.98e-01 100.0% 67.5%
4658740 220.1.1.82 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.53 42.0 3.98e-01 98.2% 78.7%
3699753 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.53 45.0 3.72e-01 96.4% 95.0%