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NC_028843.1__YP_009202454.1__AVU99_gp112__00067

Bact-Vir

NC_028843.1__YP_009202454.1__AVU99_gp112__00067

Identity

Accession:
NC_028843 ↗
Kingdom:
phage

Quality

83.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vilmaviridae› Lumosvirus› Mycobacterium_phage_Lolly9

TaxID: 1698711

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-36_52-91
PDB
Domain cluster: rep: OP172814.1__WAX16789.1__PD482P1_00022__00022__D2-101
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.77 41.0 4.24e-01 89.3% 54.8%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.77 35.0 3.61e-01 89.3% 44.4%
1ml8A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.75 31.0 4.47e-01 80.0% 85.3%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.67 34.0 3.14e-01 97.3% 37.4%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.31e-01 100.0% 67.9%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.61 49.0 4.92e-01 100.0% 84.2%
1a2pA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.60 42.0 3.67e-01 93.3% 50.0%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 38.0 3.97e-01 93.3% 73.2%
2k5wA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.55 44.0 3.97e-01 90.7% 84.7%
3agkA01 3.30.960.10 Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 0.55 46.0 3.91e-01 94.7% 89.1%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 42.0 4.44e-01 100.0% 90.9%
3exmA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.53 36.0 2.66e-01 92.0% 27.2%
5gvyA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.53 38.0 3.15e-01 77.3% 89.7%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.52 40.0 3.95e-01 88.0% 76.8%
2b7jB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 40.0 3.17e-01 88.0% 80.8%
1zs7A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.50 45.0 4.03e-01 98.7% 98.1%
7bsbI01 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.50 36.0 3.21e-01 81.3% 96.9%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4064452 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.82 47.0 3.77e-01 100.0% 30.7%
1837476 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.77 35.0 3.73e-01 89.3% 47.8%
4014812 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.77 46.0 5.06e-01 94.7% 75.0%
4043931 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.75 38.0 4.25e-01 90.7% 61.7%
3300051 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.73 47.0 4.79e-01 100.0% 66.7%
4930861 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 44.0 4.70e-01 100.0% 70.8%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.71 48.0 4.80e-01 100.0% 69.3%
4172704 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.70 39.0 4.47e-01 93.3% 74.5%
4599964 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.70 33.0 3.32e-01 89.3% 42.7%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.70 47.0 5.22e-01 100.0% 86.7%
3553983 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.70 47.0 5.21e-01 100.0% 86.7%
3363360 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.70 45.0 4.29e-01 100.0% 57.6%
4478959 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.69 33.0 3.39e-01 89.3% 44.0%
4201840 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.68 33.0 3.29e-01 89.3% 41.2%
4080030 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.68 33.0 3.35e-01 89.3% 44.0%
2502895 2.27.1.0 ↗ beta barrels › OB-fold 0.66 59.0 5.87e-01 98.7% 100.0%
3571487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 43.0 4.43e-01 100.0% 71.2%
3788978 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.61 40.0 3.40e-01 100.0% 42.5%
3867384 4.1.1.50 ↗ beta barrels › SH3 › SH3 › SH3 › MIB_HERC2 0.61 49.0 4.85e-01 100.0% 82.5%
3559960 2006.1.6.66 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.58 41.0 4.26e-01 100.0% 80.0%
3734253 3009.1.1.1 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › DSBA 0.58 46.0 3.26e-01 86.7% 96.0%
5033976 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.56 46.0 3.27e-01 90.7% 30.4%
4024945 4004.1.1.0 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like 0.55 48.0 3.58e-01 100.0% 62.5%
3701382 312.1.1.8 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › DcpS_C 0.54 49.0 3.35e-01 100.0% 94.6%
4971386 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.54 44.0 2.96e-01 90.7% 60.1%
4356530 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.54 48.0 3.57e-01 98.7% 76.2%
3373766 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.52 45.0 3.64e-01 100.0% 86.7%
5041223 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.51 44.0 2.92e-01 94.7% 57.7%
3483750 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.51 45.0 3.39e-01 100.0% 91.1%
4989279 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 43.0 4.12e-01 94.7% 88.9%