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NC_028849.1__YP_009203103.1__AVT52_gp60__00043
Bact-VirNC_028849.1__YP_009203103.1__AVT52_gp60__00043
Identity
- Accession:
- NC_028849 ↗
- Kingdom:
- phage
Quality
90.6
mean pLDDT
Taxonomy
TaxID: 1647300
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-73
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4eyyQ02 | 3.20.170.50 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Dot/Icm secretion system IcmQ, C-terminal domain | 0.70 | 63.0 | 5.13e-01 | 100.0% | 84.2% |
| 3dc4A00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.67 | 58.0 | 3.81e-01 | 100.0% | 26.8% |
| 4gw9A02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.65 | 35.0 | 3.05e-01 | 100.0% | 34.8% |
| 1ab8A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.61 | 52.0 | 3.86e-01 | 100.0% | 83.6% |
| 3gvzA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.61 | 53.0 | 3.53e-01 | 100.0% | 82.4% |
| 5oj2A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 44.0 | 4.02e-01 | 100.0% | 57.5% |
| 3mlqH00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.60 | 31.0 | 3.63e-01 | 100.0% | 71.4% |
| 4oq1A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 50.0 | 4.36e-01 | 100.0% | 60.4% |
| 1a66A00 | 2.60.40.340 | Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain | 0.58 | 48.0 | 3.62e-01 | 100.0% | 61.2% |
| 1azsA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.58 | 52.0 | 3.70e-01 | 100.0% | 75.8% |
| 3jyuB01 | 3.30.2230.10 | Alpha Beta › 2-Layer Sandwich › DUSP-like › DUSP-like | 0.57 | 47.0 | 3.83e-01 | 96.8% | 85.0% |
| 7l15A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 49.0 | 4.08e-01 | 100.0% | 68.1% |
| 6em3x01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.57 | 47.0 | 3.42e-01 | 95.2% | 37.3% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.56 | 32.0 | 3.29e-01 | 100.0% | 57.6% |
| 2wz1B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.56 | 46.0 | 3.40e-01 | 100.0% | 73.5% |
| 5oyhD00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.55 | 45.0 | 3.41e-01 | 100.0% | 75.1% |
| 2petA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 48.0 | 3.98e-01 | 100.0% | 62.9% |
| 6ksrA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 41.0 | 3.10e-01 | 82.3% | 98.1% |
| 1f3lA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.54 | 47.0 | 3.49e-01 | 100.0% | 71.2% |
| 2g8yA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.54 | 40.0 | 2.80e-01 | 79.0% | 40.4% |
| 2d42A02 | 3.10.450.380 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 32.0 | 3.19e-01 | 100.0% | 53.8% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.54 | 43.0 | 3.82e-01 | 98.4% | 59.4% |
| 3db0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 44.0 | 3.66e-01 | 100.0% | 80.6% |
| 7jooC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 3.86e-01 | 100.0% | 84.5% |
| 6cxhA03 | 2.60.40.1580 | Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 | 0.51 | 43.0 | 3.47e-01 | 100.0% | 67.6% |
| 1ehiA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 44.0 | 3.43e-01 | 100.0% | 66.0% |
| 3qq2B00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.51 | 36.0 | 2.41e-01 | 100.0% | 18.8% |
| 5uayA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.51 | 40.0 | 3.83e-01 | 98.4% | 84.1% |
| 2huhA01 | 2.60.40.1600 | Mainly Beta › Sandwich › Immunoglobulin-like › Smr-associated-like | 0.51 | 42.0 | 3.40e-01 | 100.0% | 69.1% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3486057 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.78 | 52.0 | 5.34e-01 | 87.1% | 71.7% |
| 4142096 | 5.1.4.321 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30361 | 0.69 | 39.0 | 2.27e-01 | 100.0% | 7.2% |
| 5048876 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.66 | 54.0 | 5.39e-01 | 100.0% | 89.2% |
| 3659932 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.63 | 55.0 | 3.68e-01 | 100.0% | 32.8% |
| 3597544 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.63 | 53.0 | 4.25e-01 | 100.0% | 46.2% |
| 3927982 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 54.0 | 4.74e-01 | 100.0% | 64.2% |
| 3412169 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 54.0 | 4.55e-01 | 100.0% | 59.0% |
| 3740491 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.61 | 52.0 | 4.08e-01 | 100.0% | 44.4% |
| 3838338 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.61 | 52.0 | 4.76e-01 | 100.0% | 84.7% |
| 3581172 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.61 | 44.0 | 2.91e-01 | 100.0% | 17.2% |
| 4342104 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.60 | 51.0 | 3.76e-01 | 100.0% | 55.1% |
| 3666791 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 43.0 | 4.55e-01 | 80.6% | 100.0% |
| 3916383 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.59 | 50.0 | 3.84e-01 | 100.0% | 60.0% |
| 5021958 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 33.0 | 3.64e-01 | 100.0% | 68.0% |
| 3500941 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.57 | 43.0 | 3.44e-01 | 82.3% | 40.0% |
| 4950105 | 312.1.1.0 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related | 0.57 | 39.0 | 2.87e-01 | 72.6% | 33.7% |
| 3244285 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.56 | 44.0 | 4.28e-01 | 100.0% | 77.3% |
| 3957239 | 3781.1.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N | 0.56 | 28.0 | 3.29e-01 | 91.9% | 66.7% |
| 3295499 | 263.1.1.6 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › PF27048 | 0.56 | 36.0 | 3.79e-01 | 100.0% | 72.7% |
| 3307205 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.55 | 45.0 | 3.75e-01 | 100.0% | 59.2% |
| 3519598 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.55 | 41.0 | 3.73e-01 | 100.0% | 58.9% |
| 1179718 | 3698.1.1.2 ↗ | beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › PRMT_C | 0.55 | 47.0 | 3.49e-01 | 100.0% | 70.8% |
| 5026843 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.55 | 49.0 | 3.78e-01 | 100.0% | 52.6% |
| 3988004 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 47.0 | 4.07e-01 | 100.0% | 61.0% |
| None | — | 0.55 | 32.0 | 2.74e-01 | 100.0% | 31.5% | |
| 4417360 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.54 | 45.0 | 3.31e-01 | 100.0% | 62.1% |
| 6909 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.54 | 33.0 | 3.43e-01 | 98.4% | 63.6% |
| 3696592 | 2484.1.1.220 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27033 | 0.54 | 43.0 | 3.07e-01 | 95.2% | 89.8% |
| 4945660 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.54 | 45.0 | 3.52e-01 | 100.0% | 79.3% |
| 3342013 | 4309.1.1.1 ↗ | a+b complex topology › DUSP, domain in ubiquitin-specific proteases › DUSP, domain in ubiquitin-specific proteases › DUSP, domain in ubiquitin-specific proteases › DUSP | 0.54 | 42.0 | 3.44e-01 | 95.2% | 85.7% |
| 3865234 | 7581.1.1.22 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt | 0.53 | 46.0 | 3.05e-01 | 100.0% | 71.8% |
| 3813686 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 43.0 | 2.89e-01 | 91.9% | 36.6% |
| 4677391 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.52 | 35.0 | 3.29e-01 | 100.0% | 52.9% |
| 4928659 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.51 | 36.0 | 3.26e-01 | 75.8% | 67.8% |
| 3972650 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 42.0 | 3.63e-01 | 100.0% | 98.2% |
| 3176450 | 1.1.5.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 | 0.51 | 42.0 | 3.65e-01 | 100.0% | 62.4% |
| 3999726 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.51 | 35.0 | 3.13e-01 | 75.8% | 88.0% |
| 3461283 | 77.1.1.8 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › PF28611 | 0.50 | 35.0 | 3.04e-01 | 74.2% | 61.2% |