NC_028850.1__YP_009203166.1__AVU16_gp10__00010

Bact-Vir

Identity

Accession:: NC_028850 ↗
Kingdom:: phage

Quality

75.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autonotataviridae› Aghbyvirus› Yersinia_phage_vB_YenP_ISAO8

TaxID: 1675027

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-84

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ccgA00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.74	56.0	4.00e-01	84.8%	28.0%
3crmA02	1.10.287.890	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain	0.70	57.0	5.33e-01	90.9%	86.9%
3uk6A02	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.66	47.0	4.34e-01	74.2%	62.7%
4od4A02	1.20.120.1780	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase	0.65	49.0	4.08e-01	83.3%	87.4%
1sxjD02	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.63	44.0	4.32e-01	72.7%	72.9%
1lq7A00	1.20.1270.70	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle	0.58	40.0	4.00e-01	71.2%	88.1%
2pmrA00	1.20.1270.90	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like	0.56	43.0	4.12e-01	83.3%	96.1%
2gytA01	1.10.287.2070	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.55	35.0	3.49e-01	74.2%	60.6%
2ex3B02	1.20.1270.230	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › DNA terminal protein Gp3, priming domain	0.54	38.0	3.65e-01	75.8%	61.7%
1wcrA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.51	47.0	3.98e-01	100.0%	99.0%
2b5dX01	3.20.110.10	Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain	0.51	42.0	2.65e-01	97.0%	69.8%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4957365	5069.1.3.0 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits	0.73	51.0	4.26e-01	72.7%	84.5%
3519328	148.1.3.18 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C	0.70	49.0	4.28e-01	72.7%	54.7%
3455917	632.7.1.38 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › FPP	0.63	50.0	4.64e-01	87.9%	97.6%
4956012	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.61	51.0	4.38e-01	93.9%	87.6%
5050323	3962.1.1.0 ↗	alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit	0.60	50.0	3.94e-01	92.4%	42.1%
3396058	3361.1.1.1 ↗	alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › RAC_head	0.59	51.0	4.67e-01	98.5%	77.8%
5056041	219.1.1.0 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases	0.57	49.0	3.30e-01	100.0%	42.2%
55476	4192.1.1.0 ↗	alpha bundles › DNA terminal protein C-terminal domain › DNA terminal protein C-terminal domain › DNA terminal protein C-terminal domain	0.55	39.0	3.68e-01	75.8%	62.5%