Back to structures

NC_028850.1__YP_009203197.1__AVU16_gp41__00041

Bact-Vir

NC_028850.1__YP_009203197.1__AVU16_gp41__00041

Identity

Accession:
NC_028850 ↗
Kingdom:
phage

Quality

78.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-97
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11123.15 best DNA_Packaging_2 58.7 7.00e-16 89.9% 77.5%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rz4A01 1.25.40.250 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat; domain 1 0.59 40.0 3.68e-01 70.8% 78.3%
5lb3B02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 42.0 3.19e-01 82.0% 65.8%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5028435 4040.1.1.1 alpha bundles › Fic-like › Fic-like › Fic-like › Fic 0.67 53.0 3.66e-01 82.0% 28.1%
3213137 196.1.1.1 alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS 0.58 44.0 3.92e-01 80.9% 63.8%