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NC_028853.1__YP_009203394.1__AVV64_gp28__00028

Bact-Vir

NC_028853.1__YP_009203394.1__AVV64_gp28__00028

Identity

Accession:
NC_028853 ↗
Kingdom:
phage

Quality

75.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mannheimia_phage_vB_MhS_535AP2

TaxID: 1572743

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 55-147
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vo8A00 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 55.0 4.81e-01 97.8% 60.7%
2woyA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 56.0 4.73e-01 97.8% 68.4%
2oezA01 2.60.440.10 Mainly Beta › Sandwich › YacF-like › YacF-like domains 0.64 44.0 4.74e-01 93.5% 85.9%
1i9zA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.61 44.0 3.03e-01 76.3% 24.7%
1g43A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.61 51.0 4.33e-01 94.6% 66.3%
8begA03 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 52.0 4.47e-01 97.8% 67.8%
2x9zA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 51.0 4.39e-01 96.8% 59.7%
3frhA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 29.0 2.33e-01 95.7% 23.0%
3n9vB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.59 43.0 3.01e-01 76.3% 28.4%
4igbB02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 51.0 4.46e-01 97.8% 63.6%
2xw7A00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.57 29.0 2.34e-01 95.7% 25.1%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 4.10e-01 94.6% 98.1%
8begA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 49.0 4.16e-01 97.8% 71.4%
6sl4A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.57 48.0 4.14e-01 94.6% 66.0%
2ylkA00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.56 47.0 4.12e-01 94.6% 64.8%
4iefA00 2.60.40.3800 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 49.0 3.81e-01 95.7% 79.7%
3qh6A00 3.10.129.150 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Domain of unknown function (DUF5070) 0.55 41.0 3.62e-01 100.0% 52.9%
2b39A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 4.52e-01 100.0% 95.7%
3hr6A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.74e-01 92.5% 86.0%
2bpa200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.72e-01 95.7% 57.7%
4q9bA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 4.24e-01 93.5% 89.1%
3grzB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 35.0 2.76e-01 74.2% 33.2%
2esrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 35.0 2.95e-01 76.3% 40.6%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 38.0 4.16e-01 92.5% 98.6%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 4.40e-01 94.6% 100.0%
2rioA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 29.0 3.08e-01 100.0% 62.2%
1m06G00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.61e-01 98.9% 55.6%
4kc3B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 3.52e-01 93.5% 72.7%
3m3iB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 44.0 3.64e-01 97.8% 65.1%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.51 36.0 3.89e-01 87.1% 93.3%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.51 29.0 3.07e-01 97.8% 62.0%
3lsoA03 2.60.40.2260 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.57e-01 93.5% 88.6%
2mklC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 4.01e-01 92.5% 85.7%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.33e-01 95.7% 95.3%
2jtdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.58e-01 92.5% 63.9%
6aieA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 32.0 2.57e-01 73.1% 33.0%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3396112 10.32.1.235 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MBF2 0.68 60.0 5.86e-01 100.0% 89.0%
4066350 11.1.1.1140 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cohesin 0.67 55.0 4.91e-01 96.8% 63.1%
5007335 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.67 51.0 4.24e-01 97.8% 46.1%
1885 11.1.5.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Cohesin 0.67 55.0 4.81e-01 97.8% 60.7%
4995625 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 46.0 5.17e-01 93.5% 100.0%
4956625 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.64 47.0 4.92e-01 94.6% 84.7%
3741774 5046.1.1.0 ↗ extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b 0.64 54.0 5.43e-01 92.5% 94.7%
3475757 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 54.0 4.79e-01 95.7% 88.1%
4941983 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 54.0 4.78e-01 97.8% 99.3%
1111986 10.32.1.84 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF6947 0.61 54.0 4.66e-01 97.8% 95.2%
3506716 10.30.1.1 ↗ beta sandwiches › jelly-roll › Latrophilin 1 gal_lectin domain › Latrophilin 1 gal_lectin domain › Gal_Lectin 0.61 51.0 4.86e-01 95.7% 96.5%
4280499 929.1.1.3 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin › PCSK9_C3 0.61 46.0 4.89e-01 100.0% 95.0%
5054924 4182.1.1.0 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.61 53.0 4.54e-01 95.7% 78.7%
3909881 11.1.5.95 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › TMEM132_3rd 0.61 52.0 4.44e-01 96.8% 59.3%
3896769 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.60 52.0 4.25e-01 100.0% 85.4%
3508837 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 44.0 4.48e-01 83.9% 83.3%
5055872 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 50.0 4.28e-01 96.8% 95.5%
3519532 11.1.1.588 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fibulin_C 0.58 50.0 4.27e-01 95.7% 65.8%
3363899 10.32.1.198 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.58 49.0 4.04e-01 98.9% 89.1%
3177162 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 48.0 4.61e-01 92.5% 90.0%
4002435 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 47.0 3.97e-01 97.8% 50.9%
3813777 304.151.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase 0.58 45.0 4.40e-01 84.9% 81.9%
3533165 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 4.46e-01 92.5% 87.5%
5006437 70.2.1.6 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DUF22 0.57 49.0 4.58e-01 96.8% 79.8%
5055324 4182.1.1.0 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.56 50.0 4.26e-01 95.7% 64.8%
3904321 11.1.5.95 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › TMEM132_3rd 0.56 48.0 4.13e-01 94.6% 80.0%
2771876 1.1.16.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.55 38.0 3.62e-01 86.0% 59.3%
3992051 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.55 44.0 4.28e-01 92.5% 78.1%
3394001 12.1.1.25 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Fucosidase_C 0.55 47.0 4.33e-01 97.8% 81.5%
3832008 207.1.1.37 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID 0.55 44.0 3.43e-01 91.4% 41.5%
3251294 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 4.32e-01 89.2% 83.2%
3906682 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.45e-01 94.6% 91.4%
3195848 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.54 36.0 3.82e-01 86.0% 77.5%
3860841 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.54 47.0 3.58e-01 97.8% 50.4%
3544039 11.2.1.19 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF3657 0.54 42.0 2.97e-01 87.1% 32.5%
3362329 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 45.0 3.83e-01 93.5% 82.5%
3413761 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 45.0 4.00e-01 97.8% 80.7%
3880215 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.53 43.0 3.69e-01 92.5% 58.1%
3997847 304.151.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase 0.53 41.0 4.07e-01 84.9% 87.0%
4930212 328.7.1.0 ↗ a+b two layers › IF3-like › Smr domain › Smr domain 0.52 29.0 3.31e-01 97.8% 71.4%
3479522 4955.1.1.0 ↗ a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.52 43.0 4.54e-01 92.5% 100.0%
3585229 50.1.1.2 ↗ beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S77 0.52 41.0 3.63e-01 86.0% 83.6%
4265082 872.1.1.11 ↗ a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › PF27391 0.52 37.0 3.88e-01 74.2% 94.1%
4945432 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 37.0 3.87e-01 87.1% 84.7%
3992668 2003.1.5.42 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.51 39.0 2.99e-01 79.6% 37.6%
2770325 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 38.0 3.62e-01 77.4% 89.6%
4247432 2003.1.5.60 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FmrO 0.51 37.0 2.88e-01 77.4% 36.2%
3578304 11.1.1.297 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 0.51 43.0 3.84e-01 97.8% 90.0%
3520409 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 39.0 3.57e-01 86.0% 63.8%
3577173 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 41.0 4.01e-01 100.0% 82.9%
D2 medium residues 1-54
PDB