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NC_028857.1__YP_009203786.1__CPT_Merlin72__00072

Bact-Vir

NC_028857.1__YP_009203786.1__CPT_Merlin72__00072

Identity

Accession:
NC_028857 ↗
Kingdom:
phage

Quality

83.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Moonvirus› Citrobacter_phage_Merlin

TaxID: 1675602

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-86
PDB
Domain cluster: rep: HM032710.1__ADI96351.1__Ac42p113__00113__D6-77
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jyaB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.77 56.0 4.79e-01 76.6% 73.6%
1qmoE01 2.60.40.4220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.73 38.0 3.75e-01 85.7% 47.6%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.72 46.0 4.30e-01 94.8% 53.2%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.71 49.0 4.92e-01 80.5% 70.0%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.69 61.0 5.07e-01 100.0% 83.1%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.69 62.0 4.69e-01 100.0% 65.9%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.68 55.0 4.68e-01 87.0% 79.7%
1oh1A00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.68 44.0 3.91e-01 75.3% 46.8%
2r9yA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.66 46.0 3.71e-01 74.0% 88.4%
1qmnA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.65 46.0 3.76e-01 74.0% 95.7%
3f1sA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.65 46.0 3.67e-01 74.0% 94.0%
1hw7A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.62 53.0 4.06e-01 93.5% 68.2%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 41.0 4.41e-01 70.1% 83.6%
4uf7B00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.61 56.0 3.47e-01 100.0% 20.9%
3bexA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 49.0 4.07e-01 88.3% 77.9%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 49.0 3.00e-01 100.0% 14.9%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 48.0 3.48e-01 87.0% 63.6%
2lruA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 50.0 4.71e-01 94.8% 87.8%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 46.0 3.04e-01 84.4% 33.4%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 48.0 4.03e-01 87.0% 70.2%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.59 42.0 3.84e-01 74.0% 55.8%
1vq0A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.59 50.0 3.59e-01 93.5% 51.1%
7qrlA01 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.59 40.0 3.36e-01 70.1% 58.5%
2wxwA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.59 42.0 3.30e-01 74.0% 60.1%
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.59 51.0 4.76e-01 100.0% 86.6%
1vzyA01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.58 45.0 3.28e-01 85.7% 50.9%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.58 50.0 5.01e-01 93.5% 91.1%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.58 49.0 4.42e-01 93.5% 86.9%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.58 50.0 4.07e-01 93.5% 83.5%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 37.0 3.37e-01 71.4% 49.0%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 38.0 4.31e-01 76.6% 91.4%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.57 48.0 3.72e-01 97.4% 55.6%
4nn5C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 4.21e-01 88.3% 96.0%
5bp3B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.57 45.0 3.03e-01 85.7% 62.4%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.57 48.0 3.27e-01 98.7% 49.0%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 42.0 3.95e-01 90.9% 65.2%
1lshA01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.56 46.0 3.34e-01 98.7% 77.6%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.56 47.0 3.62e-01 93.5% 43.5%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.55 39.0 3.85e-01 74.0% 80.2%
2m4lA00 2.40.128.360 Mainly Beta › Beta Barrel › Lipocalin › 0.55 47.0 4.30e-01 93.5% 85.9%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 44.0 3.05e-01 88.3% 96.5%
1mg2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 48.0 3.05e-01 98.7% 28.3%
1e3hA03 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.54 45.0 3.43e-01 98.7% 99.5%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 35.0 3.87e-01 83.1% 82.0%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.54 41.0 3.93e-01 85.7% 74.5%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.54 45.0 3.61e-01 100.0% 87.5%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 49.0 3.45e-01 100.0% 73.4%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 46.0 3.54e-01 98.7% 83.1%
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.76e-01 97.4% 72.1%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 4.12e-01 96.1% 97.9%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 45.0 3.11e-01 98.7% 46.9%
2nvwA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 40.0 3.05e-01 85.7% 51.0%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 2.70e-01 90.9% 39.0%
3oblA00 2.40.128.450 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 3.53e-01 92.2% 74.2%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 36.0 3.40e-01 98.7% 59.0%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.51 36.0 3.69e-01 79.2% 80.8%
1o7dD01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.50 40.0 2.87e-01 90.9% 92.0%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4380331 295.1.1.27 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.78 52.0 5.42e-01 74.0% 74.3%
5006845 295.1.1.27 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.78 51.0 5.93e-01 85.7% 94.5%
3924597 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.71 58.0 6.04e-01 89.6% 98.6%
4103142 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.71 58.0 5.73e-01 89.6% 95.0%
3958695 3484.1.1.2 ↗ a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 0.69 59.0 4.63e-01 93.5% 48.1%
185116 295.1.1.2 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA 0.69 61.0 5.06e-01 100.0% 82.5%
3281348 4221.1.1.0 ↗ a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like 0.69 48.0 4.41e-01 80.5% 56.0%
3574409 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.69 56.0 5.39e-01 90.9% 78.9%
3989851 11.1.1.1339 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CFSR 0.68 49.0 3.96e-01 75.3% 70.3%
3742051 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 56.0 3.58e-01 100.0% 20.6%
4388541 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.66 50.0 4.31e-01 80.5% 72.5%
3248970 101.1.12.0 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.66 50.0 4.47e-01 81.8% 90.0%
4648495 5.1.3.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 0.65 49.0 3.38e-01 97.4% 23.8%
4929797 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.65 44.0 4.86e-01 75.3% 91.5%
3617983 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 57.0 3.59e-01 98.7% 32.0%
3470076 861.1.1.0 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein 0.64 46.0 3.82e-01 76.6% 100.0%
3613171 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 51.0 3.78e-01 100.0% 34.7%
4194439 848.1.1.1 ↗ a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 0.62 52.0 3.70e-01 92.2% 48.9%
3996785 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.61 55.0 4.33e-01 100.0% 96.2%
3575357 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 55.0 3.54e-01 98.7% 33.7%
3230405 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 54.0 3.32e-01 100.0% 18.1%
3630950 10.12.1.51 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 0.60 45.0 2.94e-01 77.9% 97.3%
3457412 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.60 48.0 3.32e-01 88.3% 55.9%
4008896 11.1.1.1286 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27224 0.60 51.0 4.39e-01 96.1% 92.0%
3402045 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.60 51.0 4.64e-01 96.1% 100.0%
3565994 5.1.4.137 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nbas_N 0.59 52.0 3.10e-01 100.0% 14.7%
4027676 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 52.0 3.28e-01 97.4% 40.8%
138255 9.1.1.6 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › NlpE 0.58 49.0 4.40e-01 93.5% 87.0%
5039314 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.58 37.0 2.94e-01 70.1% 31.6%
3629277 5.1.5.89 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF31099 0.58 52.0 3.22e-01 98.7% 57.9%
3410461 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 53.0 3.35e-01 100.0% 25.9%
4431372 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.57 43.0 4.04e-01 80.5% 87.4%
4212114 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.57 49.0 3.86e-01 100.0% 82.3%
3173549 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 50.0 3.17e-01 98.7% 31.1%
4030396 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.56 47.0 4.04e-01 97.4% 80.0%
3605064 5.1.4.74 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.56 49.0 3.00e-01 97.4% 24.9%
4937477 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.56 45.0 3.37e-01 92.2% 57.7%
3995339 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 48.0 3.93e-01 98.7% 53.3%
3894385 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 48.0 3.20e-01 97.4% 40.0%
3679761 5.1.5.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nup88 0.55 48.0 2.84e-01 97.4% 33.6%
4929818 861.1.1.0 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein 0.55 46.0 3.82e-01 92.2% 96.3%
3216442 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.55 49.0 3.54e-01 98.7% 40.5%
3332764 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 43.0 4.19e-01 96.1% 81.2%
4027520 5.1.4.262 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_CAF1B_HIR1 0.54 50.0 3.03e-01 100.0% 35.1%
4002646 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 48.0 3.34e-01 98.7% 42.3%
4062936 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.54 42.0 3.87e-01 85.7% 76.2%
3953254 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 47.0 3.60e-01 98.7% 65.9%
3293481 861.1.1.1 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein › Mago_nashi 0.54 45.0 3.80e-01 90.9% 100.0%
4385005 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.53 41.0 3.86e-01 83.1% 90.5%
4067945 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.53 41.0 3.74e-01 85.7% 79.0%
3286934 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 42.0 3.30e-01 96.1% 54.6%
3699300 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 42.0 2.58e-01 90.9% 65.3%