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NC_028871.1__YP_009204857.1__AVV22_gp14__00014

Bact-Vir

Identity

Accession:: NC_028871 ↗
Kingdom:: phage

Quality

80.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Listeria_phage_vB_LmoS_188

TaxID: 1591072

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 31-91

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1svmA02	1.20.1050.70	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Large T antigen, SV40, domain 3	0.63	50.0	4.05e-01	86.9%	93.2%
3q9oA02	3.90.1350.10	Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain	0.58	48.0	3.62e-01	98.4%	64.7%
3o2tA00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.58	42.0	2.71e-01	78.7%	32.9%
2qdjA03	1.10.472.140	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 ›	0.57	46.0	3.90e-01	96.7%	74.1%
3ismC01	1.25.40.240	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain	0.55	38.0	2.88e-01	70.5%	68.2%
3pdiA02	3.40.50.12380	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase MoFe cofactor biosynthesis protein NifE, C-terminal	0.55	46.0	3.08e-01	96.7%	86.8%
4o92A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.55	40.0	3.33e-01	77.0%	86.7%
3dcfA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.54	37.0	2.86e-01	72.1%	82.4%
3r2qA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.52	38.0	3.14e-01	78.7%	54.0%
1wrdA00	1.20.58.160	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	38.0	3.29e-01	82.0%	57.1%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3904095	3922.1.1.0 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3	0.56	47.0	4.14e-01	95.1%	64.2%
5012790	7076.1.1.0 ↗		0.54	37.0	3.43e-01	70.5%	62.7%