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NC_028883.1__YP_009206173.1__PHIMMP01_20054__00055

Bact-Vir

NC_028883.1__YP_009206173.1__PHIMMP01_20054__00055

Identity

Accession:
NC_028883 ↗
Kingdom:
phage

Quality

68.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-58
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7vkcA01 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.62 49.0 3.51e-01 88.9% 35.2%
3b0cW00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.60 46.0 4.20e-01 85.2% 93.2%
3pfyA02 6.10.20.180 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.60 46.0 4.59e-01 90.7% 100.0%
1gs0A01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.57 45.0 3.40e-01 85.2% 38.8%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4073199 101.1.11.190 alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF2610 0.69 53.0 5.68e-01 87.0% 100.0%
3502686 2484.1.1.88 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ParM_N 0.69 47.0 3.34e-01 88.9% 23.0%
3539926 603.1.1.97 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE 0.67 47.0 3.05e-01 72.2% 28.9%
4645504 103.5.1.3 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › IPMS_D2 0.66 56.0 4.73e-01 98.1% 95.8%
3787836 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.66 56.0 3.31e-01 98.1% 24.3%
4942180 2006.1.4.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 0.64 46.0 3.44e-01 75.9% 65.6%
3494358 148.1.3.213 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_bind 0.64 52.0 4.70e-01 90.7% 73.3%
3171546 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.64 53.0 3.16e-01 98.1% 23.3%
3951354 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.63 53.0 5.07e-01 98.1% 89.2%
4510097 518.1.1.1 alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N 0.57 47.0 4.33e-01 96.3% 90.7%