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NC_028887.1__YP_009206476.1__AVV02_gp121__00121

Bact-Vir

NC_028887.1__YP_009206476.1__AVV02_gp121__00121

Identity

Accession:
NC_028887 ↗
Kingdom:
phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Bequatrovirus› Bacillus_phage_AvesoBmore

TaxID: 1698451

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-77
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e8vA00 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.56 35.0 3.43e-01 100.0% 56.1%
4ll1C02 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 3.80e-01 100.0% 50.0%
1zldA00 2.60.40.1920 Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA 0.55 38.0 3.47e-01 94.7% 52.9%
5j3uA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 34.0 2.89e-01 100.0% 37.1%
2wnvD00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 3.16e-01 96.1% 41.4%
1n9eA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.52 37.0 2.31e-01 100.0% 11.7%
2huhA01 2.60.40.1600 Mainly Beta › Sandwich › Immunoglobulin-like › Smr-associated-like 0.51 35.0 2.95e-01 98.7% 39.7%
7ui8A01 2.60.40.3930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 36.0 3.40e-01 96.1% 58.8%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4847868 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.60 33.0 3.82e-01 71.1% 76.9%
3732257 11.1.1.89 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1223 0.59 53.0 4.53e-01 100.0% 62.5%
5060622 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 42.0 3.84e-01 100.0% 57.1%
3860802 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.57 41.0 3.46e-01 100.0% 43.7%
3391912 11.1.1.822 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 0.57 38.0 3.66e-01 98.7% 58.9%
3746356 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.56 45.0 3.24e-01 98.7% 29.6%
5050076 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.55 48.0 3.61e-01 100.0% 51.0%
3199216 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.55 47.0 3.79e-01 100.0% 80.6%
2083182 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 38.0 3.34e-01 96.1% 47.9%
3788380 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 43.0 3.19e-01 88.2% 50.2%
3268156 223.2.1.4 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.54 41.0 3.14e-01 82.9% 57.3%
None — 0.54 42.0 2.91e-01 100.0% 24.1%
5062854 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 2.75e-01 98.7% 18.6%
3531351 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.53 41.0 2.95e-01 100.0% 27.5%
3999331 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.52 44.0 3.85e-01 98.7% 64.0%
5061011 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.52 41.0 2.86e-01 97.4% 24.4%
3174199 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.52 43.0 3.23e-01 98.7% 45.8%
3554439 11.1.1.934 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N, Arrestin_C 0.52 45.0 2.93e-01 100.0% 29.6%
3781413 11.1.1.626 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Bul1_N 0.52 44.0 3.11e-01 100.0% 61.1%
4961996 11.1.1.1403 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1616 0.51 40.0 3.45e-01 97.4% 52.0%
4949090 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.51 35.0 3.32e-01 72.4% 85.3%
4466937 11.1.1.248 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG6 0.51 38.0 3.34e-01 100.0% 49.2%
4135250 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.50 39.0 2.58e-01 85.5% 40.9%
5061538 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 26.0 2.93e-01 78.9% 65.5%
3507788 11.1.1.76 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GMP_PDE_delta 0.50 42.0 3.45e-01 100.0% 49.1%