Back to structures

NC_028887.1__YP_009206593.1__AVV02_gp238__00238

Bact-Vir

NC_028887.1__YP_009206593.1__AVV02_gp238__00238

Identity

Accession:
NC_028887 ↗
Kingdom:
phage

Quality

71.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-60
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.57 26.0 2.12e-01 85.0% 22.8%
1xjvA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 2.82e-01 75.0% 39.6%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002533 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.59 39.0 3.29e-01 91.7% 39.0%
3355968 375.1.1.190 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Fra10Ac1 0.54 41.0 3.48e-01 88.3% 78.3%
3693225 3167.1.1.0 a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) 0.54 36.0 3.58e-01 70.0% 93.8%
3170708 632.1.1.6 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Pho88 0.51 37.0 2.81e-01 93.3% 32.4%
3406876 5.1.12.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.51 42.0 2.77e-01 100.0% 49.2%