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NC_028890.1__YP_009207019.1__TSARBOMBA_204__00184

Bact-Vir

NC_028890.1__YP_009207019.1__TSARBOMBA_204__00184

Identity

Accession:
NC_028890 ↗
Kingdom:
phage

Quality

84.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-64
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.81 71.0 7.07e-01 93.8% 100.0%
1au7A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 61.0 5.89e-01 95.3% 100.0%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.68 61.0 5.66e-01 100.0% 90.1%
4gkfA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.67 50.0 3.88e-01 81.2% 62.3%
1x57A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 53.0 4.73e-01 89.1% 78.0%
1qamA02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.65 56.0 5.26e-01 96.9% 100.0%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.65 44.0 4.32e-01 70.3% 88.2%
3vygE00 1.10.472.20 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Nitrile hydratase, beta subunit 0.64 56.0 4.26e-01 98.4% 42.4%
6ifsB02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.64 49.0 4.77e-01 82.8% 94.4%
3w0fA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 50.0 3.94e-01 85.9% 49.3%
5gkoA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 50.0 3.43e-01 90.6% 58.4%
1tdzA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 51.0 4.02e-01 89.1% 51.5%
1k82A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 50.0 4.13e-01 90.6% 56.1%
2a19A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.62 55.0 5.01e-01 98.4% 96.5%
2zt5A02 3.30.40.230 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.61 52.0 4.75e-01 93.8% 79.8%
2g8lA02 1.10.285.20 Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 0.61 47.0 4.68e-01 92.2% 81.5%
3v76A03 1.10.8.260 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HI0933 insert domain-like 0.61 44.0 4.54e-01 78.1% 95.1%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 43.0 3.71e-01 75.0% 48.0%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.61 43.0 4.25e-01 78.1% 70.6%
2ahoB02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.60 52.0 4.67e-01 98.4% 90.1%
6vddD01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 51.0 3.80e-01 100.0% 82.4%
4wr4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 41.0 3.49e-01 71.9% 59.0%
2ieqA00 1.20.5.300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 42.0 3.75e-01 73.4% 58.0%
1zq9A02 1.10.8.480 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 47.0 4.14e-01 89.1% 92.9%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.58 36.0 4.17e-01 81.2% 88.9%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 52.0 4.01e-01 100.0% 66.4%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 50.0 4.91e-01 96.9% 91.2%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.57 38.0 3.46e-01 70.3% 50.6%
1wteB01 1.10.3250.10 Mainly Alpha › Orthogonal Bundle › type ii restriction endonuclease, domain 1 › type ii restriction endonuclease, domain 1 0.57 43.0 3.32e-01 82.8% 53.7%
2dzlA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 39.0 3.93e-01 100.0% 71.2%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.56 39.0 3.99e-01 75.0% 73.4%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 38.0 3.21e-01 71.9% 56.2%
1w9yA00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.55 48.0 3.08e-01 95.3% 39.9%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.55 39.0 3.97e-01 75.0% 77.4%
2k85A00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.55 37.0 3.72e-01 70.3% 78.5%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 47.0 3.95e-01 98.4% 72.6%
1uj8A00 1.10.10.600 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IscX-like 0.54 34.0 3.30e-01 70.3% 54.8%
6ygiB01 1.10.4090.10 Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus 0.54 42.0 3.32e-01 89.1% 68.5%
3wa8B00 1.10.520.40 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › CRISPR-associated protein Cse2 0.53 45.0 3.38e-01 98.4% 46.3%
4azsA03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 39.0 3.13e-01 87.5% 36.6%
2fzlA02 6.10.140.1180 Special › Helix non-globular › Helix Hairpins › 0.53 41.0 4.15e-01 82.8% 87.1%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 40.0 2.61e-01 81.2% 23.3%
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.52 46.0 3.85e-01 100.0% 93.8%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.31e-01 70.3% 63.5%
2fbkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.28e-01 93.8% 64.1%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 39.0 3.96e-01 79.7% 85.5%
3k7yA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 43.0 3.41e-01 93.8% 62.7%
3v2lA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.51 44.0 3.61e-01 98.4% 83.3%
3bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 43.0 3.41e-01 98.4% 77.0%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3604535 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.83 74.0 5.54e-01 98.4% 45.3%
3472710 101.1.4.1 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.79 67.0 5.45e-01 92.2% 62.6%
3986190 110.1.1.0 alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.77 66.0 5.87e-01 95.3% 72.0%
3557240 3722.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.77 67.0 4.26e-01 100.0% 20.3%
3394140 3722.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.76 68.0 4.34e-01 100.0% 22.1%
3206303 3722.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.75 67.0 4.64e-01 100.0% 31.5%
3730549 3722.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.74 67.0 4.14e-01 100.0% 18.8%
3667149 3722.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.74 64.0 4.01e-01 100.0% 20.3%
5061323 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.72 64.0 6.37e-01 95.3% 100.0%
3739342 3722.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.72 66.0 4.17e-01 100.0% 21.7%
4966173 101.1.4.97 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DrmE_C 0.71 59.0 4.79e-01 93.8% 61.6%
4928704 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.69 54.0 5.02e-01 84.4% 83.7%
3704169 3285.1.1.0 alpha duplicates or obligate multimers › Alix V domain › Alix V domain › Alix V domain 0.68 62.0 4.14e-01 100.0% 76.6%
4031838 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.68 51.0 4.75e-01 81.2% 75.0%
3628125 632.15.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.68 60.0 5.73e-01 100.0% 98.7%
4934097 102.3.1.0 alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain 0.67 60.0 5.43e-01 98.4% 92.9%
5012960 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.67 55.0 5.03e-01 95.3% 76.7%
5056423 102.3.1.1 alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha 0.66 58.0 5.30e-01 98.4% 92.9%
3174764 148.1.3.113 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_TRIP13_C 0.65 54.0 4.85e-01 92.2% 65.6%
3595956 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.64 57.0 5.09e-01 100.0% 78.9%
4977057 3960.1.1.0 alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain 0.64 55.0 4.58e-01 98.4% 83.5%
3893294 3788.1.1.12 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › CCD48 0.63 55.0 4.80e-01 100.0% 70.0%
3734404 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.63 55.0 5.10e-01 96.9% 88.7%
5051532 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.63 55.0 4.61e-01 98.4% 62.7%
4010451 3788.1.1.15 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202 0.63 51.0 4.88e-01 93.8% 84.0%
4104241 148.1.3.327 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CCD48 0.62 53.0 4.74e-01 98.4% 72.6%
5017062 7094.1.1.4 alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › PF27273 0.62 43.0 4.09e-01 73.4% 88.0%
3301471 5067.1.1.17 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › AtTam38 0.61 55.0 4.58e-01 100.0% 99.1%
3254012 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.61 42.0 3.06e-01 76.6% 27.1%
4937154 102.3.1.0 alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain 0.61 52.0 4.83e-01 98.4% 92.9%
4027257 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.61 52.0 3.98e-01 95.3% 69.7%
3746278 109.4.1.162 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 0.60 57.0 2.97e-01 100.0% 4.7%
3984588 4044.1.1.1 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.60 51.0 4.10e-01 100.0% 54.8%
3177416 3722.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.59 50.0 3.12e-01 100.0% 16.0%
3967708 179.1.1.1 alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2 0.59 37.0 3.33e-01 78.1% 44.4%
3394753 192.5.1.12 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › PH_19 0.59 41.0 4.03e-01 73.4% 68.6%
3387363 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.59 42.0 4.47e-01 78.1% 87.3%
3191284 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.59 40.0 4.40e-01 71.9% 100.0%
3311033 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 40.0 2.92e-01 70.3% 99.4%
5021831 7094.1.1.0 alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin 0.58 44.0 3.91e-01 81.2% 61.1%
5070580 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.57 42.0 4.40e-01 79.7% 84.7%
3198528 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.57 41.0 4.34e-01 81.2% 100.0%
5006371 4049.1.1.0 alpha superhelices › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like 0.56 47.0 4.89e-01 90.6% 100.0%
3533053 3455.1.1.0 alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.56 47.0 3.95e-01 96.9% 93.0%
3964225 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.54 44.0 4.46e-01 87.5% 100.0%
4928737 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.53 46.0 4.06e-01 98.4% 87.4%
3706707 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.52 45.0 4.03e-01 100.0% 71.6%
4953551 4049.1.1.0 alpha superhelices › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like 0.52 45.0 4.48e-01 96.9% 98.5%