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NC_028895.1__YP_009207526.1__AVV29_gp150__00061

Bact-Vir

NC_028895.1__YP_009207526.1__AVV29_gp150__00061

Identity

Accession:
NC_028895 ↗
Kingdom:
phage

Quality

93.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-50
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ku3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.92 60.0 5.56e-01 70.0% 55.7%
1b01A00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.90 61.0 6.53e-01 70.0% 81.4%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.89 60.0 5.50e-01 70.0% 55.6%
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.82 67.0 5.20e-01 86.0% 89.6%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 53.0 4.37e-01 70.0% 39.1%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 59.0 4.98e-01 78.0% 50.0%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.80 55.0 4.85e-01 72.0% 50.7%
1wy5A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.76 52.0 3.37e-01 72.0% 29.0%
5b1aH00 1.10.10.140 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cytochrome c oxidase, subunit VIb 0.75 52.0 4.39e-01 84.0% 45.6%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 57.0 4.50e-01 92.0% 57.7%
7ymiD01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.64 48.0 3.33e-01 84.0% 37.8%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.60 42.0 4.43e-01 74.0% 86.7%
6o9aA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 44.0 3.21e-01 86.0% 29.8%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.59e-01 88.0% 100.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3090474 4020.1.1.0 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.90 65.0 4.57e-01 78.0% 27.5%
4349614 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.90 66.0 6.34e-01 78.0% 69.1%
4994798 3646.1.1.0 alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters 0.63 55.0 3.65e-01 98.0% 60.0%
D2 medium residues 51-100
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 56.0 3.46e-01 98.0% 98.4%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 42.0 3.49e-01 78.0% 37.2%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 49.0 3.80e-01 94.0% 38.6%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.62 43.0 3.84e-01 82.0% 48.1%
3iylW05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 46.0 3.75e-01 82.0% 74.0%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.62 44.0 3.61e-01 82.0% 38.5%
3nsjA02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.61 50.0 3.69e-01 90.0% 68.8%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.60 46.0 3.54e-01 90.0% 35.5%
3li9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 45.0 3.48e-01 86.0% 92.7%
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 46.0 3.87e-01 96.0% 56.7%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.59 42.0 3.51e-01 78.0% 44.2%
2uvaG09 2.40.128.700 Mainly Beta › Beta Barrel › Lipocalin › 0.59 46.0 3.71e-01 96.0% 55.2%
4iu2B01 2.60.40.3810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 48.0 3.79e-01 100.0% 81.2%
2b3rA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.58 45.0 3.42e-01 84.0% 62.9%
2cm5A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.58 45.0 3.32e-01 86.0% 57.3%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.58 46.0 3.94e-01 88.0% 62.5%
2f96A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 45.0 3.10e-01 92.0% 63.7%
3fdwA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.58 45.0 3.39e-01 86.0% 62.3%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 47.0 4.25e-01 96.0% 68.5%
1io1A02 2.170.280.10 Mainly Beta › Beta Complex › f41 fragment of flagellin, middle domain › f41 fragment of flagellin, middle domain 0.57 46.0 3.51e-01 96.0% 45.8%
4fzqA00 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.57 42.0 3.66e-01 82.0% 78.5%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 43.0 3.47e-01 94.0% 40.3%
3b7yA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 48.0 3.53e-01 98.0% 77.1%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 43.0 3.34e-01 96.0% 38.9%
2nq3A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 48.0 3.62e-01 100.0% 77.9%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 43.0 3.53e-01 98.0% 42.3%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.56 46.0 3.29e-01 100.0% 58.6%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 3.76e-01 96.0% 54.9%
2l55A00 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.55 44.0 3.82e-01 92.0% 95.1%
2z0uA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 44.0 3.44e-01 96.0% 83.6%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 48.0 2.87e-01 98.0% 86.4%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 46.0 3.79e-01 98.0% 53.1%
2qdeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 44.0 3.36e-01 96.0% 36.8%
2q2bA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 41.0 3.09e-01 86.0% 31.2%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 3.69e-01 98.0% 47.6%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.55 43.0 3.50e-01 90.0% 64.1%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 45.0 3.62e-01 100.0% 86.6%
1r0aH01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.15e-01 84.0% 73.2%
2n6eA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.54 39.0 3.27e-01 88.0% 41.8%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 41.0 3.13e-01 98.0% 69.4%
1f97A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.20e-01 84.0% 89.5%
2lrsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 41.0 3.81e-01 94.0% 73.2%
1nbwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 41.0 3.26e-01 98.0% 60.6%
1fyhB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.44e-01 92.0% 97.9%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 3.59e-01 98.0% 67.7%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.51e-01 98.0% 50.0%
3mlqH00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 34.0 3.59e-01 74.0% 78.6%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 41.0 3.08e-01 96.0% 36.9%
6n9aB02 3.30.420.200 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.52 38.0 3.56e-01 92.0% 62.3%
3lh4A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.24e-01 96.0% 56.5%
1f0cA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 35.0 2.86e-01 80.0% 53.4%
1wnhA02 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 39.0 3.10e-01 94.0% 45.8%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4017740 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 62.0 4.69e-01 96.0% 54.2%
4019088 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 56.0 3.71e-01 98.0% 24.0%
3947188 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 55.0 4.44e-01 100.0% 48.6%
3290663 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 50.0 3.49e-01 88.0% 28.3%
3427602 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.64 52.0 3.22e-01 100.0% 14.9%
3788173 2003.1.3.9 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FMO-like 0.62 55.0 3.15e-01 100.0% 44.0%
3799100 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 46.0 2.84e-01 94.0% 12.3%
5025077 3414.1.1.0 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.62 45.0 4.34e-01 82.0% 70.0%
3992390 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.61 50.0 3.56e-01 90.0% 73.3%
3259892 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.61 50.0 3.75e-01 92.0% 77.0%
4144852 220.1.1.126 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.60 43.0 3.38e-01 86.0% 35.2%
3250619 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 47.0 3.83e-01 96.0% 44.5%
4928236 2484.1.1.29 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA 0.59 49.0 3.04e-01 98.0% 30.1%
3917645 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 3.60e-01 90.0% 64.2%
3947082 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 44.0 3.82e-01 90.0% 48.9%
3507165 719.1.1.1 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XRCC4 0.59 43.0 3.40e-01 84.0% 43.2%
3390097 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.59 48.0 3.39e-01 90.0% 70.0%
5073213 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.59 46.0 3.14e-01 94.0% 61.4%
4131948 220.1.1.186 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CAYP2 0.58 45.0 3.77e-01 92.0% 84.0%
3796820 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.58 42.0 3.59e-01 78.0% 58.8%
3883616 378.1.1.1 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS 0.58 45.0 2.89e-01 88.0% 75.1%
4012826 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.58 51.0 3.69e-01 100.0% 77.9%
3731899 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.58 50.0 3.46e-01 100.0% 63.4%
4028900 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 41.0 2.92e-01 90.0% 22.9%
3467037 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.57 47.0 3.36e-01 98.0% 80.0%
3229149 11.2.1.55 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_SYDE 0.57 50.0 3.70e-01 100.0% 74.8%
4969137 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 44.0 4.01e-01 88.0% 61.4%
4237828 2484.1.1.41 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.57 47.0 3.27e-01 98.0% 57.9%
4927398 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.56 44.0 3.34e-01 98.0% 36.8%
None 0.56 40.0 2.59e-01 82.0% 13.8%
3214215 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 45.0 3.57e-01 100.0% 41.2%
4208913 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 44.0 3.88e-01 96.0% 57.5%
4977517 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 41.0 3.73e-01 86.0% 70.7%
3262383 2484.5.1.2 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.55 45.0 3.45e-01 100.0% 67.4%
3744143 220.1.1.32 beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.55 45.0 3.36e-01 100.0% 68.0%
3262446 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.54 40.0 3.32e-01 82.0% 79.6%
3808162 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 40.0 3.44e-01 84.0% 53.3%
4027866 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 44.0 3.19e-01 100.0% 77.6%
3619203 211.1.1.29 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Chromadorea_ALT 0.53 42.0 4.26e-01 96.0% 94.0%
3476897 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 43.0 3.57e-01 100.0% 81.0%
4237388 2484.1.1.41 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.52 42.0 2.63e-01 96.0% 31.1%
3996829 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.52 38.0 3.11e-01 84.0% 42.6%
3364489 11.2.1.63 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF7953 0.51 42.0 3.19e-01 92.0% 75.2%
4863416 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.51 40.0 3.34e-01 94.0% 65.0%
3244230 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.51 40.0 3.06e-01 98.0% 81.3%
4210059 2484.1.1.41 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.51 39.0 2.74e-01 94.0% 58.1%