Back to structures

NC_028895.1__YP_009207589.1__AVV29_gp087__00124

Bact-Vir

NC_028895.1__YP_009207589.1__AVV29_gp087__00124

Identity

Accession:
NC_028895 ↗
Kingdom:
phage

Quality

57.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1028-1189
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.62 39.0 4.49e-01 85.2% 86.3%
5d2lE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 38.0 4.49e-01 72.8% 95.4%
6n44A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 39.0 4.15e-01 74.1% 95.7%
3zxfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 38.0 4.12e-01 74.1% 99.3%
3q9oA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.99e-01 88.3% 86.1%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4009121 11.1.1.1285 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF31090 0.92 87.0 8.63e-01 97.5% 98.8%
5052182 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 40.0 3.76e-01 70.4% 93.3%
4011807 10.32.1.206 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PTM1-like_N 0.57 41.0 4.25e-01 74.7% 91.0%
3503839 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 33.0 3.44e-01 82.1% 63.0%
2630848 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.54 39.0 4.16e-01 73.5% 95.7%
5056603 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 35.0 3.72e-01 82.1% 74.3%
5045890 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 41.0 4.31e-01 82.1% 99.3%
3450421 9.13.1.1 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent 0.50 33.0 3.49e-01 93.2% 72.9%
D2 medium residues 59-140
PDB
Domain cluster: representative
D3 medium residues 339-419
PDB
D4 medium residues 660-749
PDB
D5 medium residues 972-1021
PDB
D6 medium residues 1210-1379
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.64 40.0 4.85e-01 70.0% 95.4%
1hf2A02 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.54 33.0 4.08e-01 77.6% 97.2%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
185692 520.2.1.1 beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.64 40.0 4.85e-01 70.0% 95.4%