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NC_028915.1__YP_009209153.1__AVU29_gp30__00030
Bact-VirNC_028915.1__YP_009209153.1__AVU29_gp30__00030
Identity
- Accession:
- NC_028915 ↗
- Kingdom:
- phage
Quality
79.5
mean pLDDT
Taxonomy
TaxID: 1636205
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-61
Domain cluster:
rep: OR420752.1__WMM95715.1__CRP403_gp1__00001__D2-53
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.80 | 65.0 | 6.52e-01 | 98.0% | 90.0% |
| 3l5iA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.78 | 62.0 | 5.10e-01 | 100.0% | 48.9% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.74 | 66.0 | 6.13e-01 | 100.0% | 79.4% |
| 7y8sB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.74 | 58.0 | 4.95e-01 | 100.0% | 52.4% |
| 3fw6A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.71 | 54.0 | 4.08e-01 | 100.0% | 35.0% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.71 | 59.0 | 4.73e-01 | 100.0% | 48.6% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.69 | 58.0 | 5.16e-01 | 100.0% | 72.4% |
| 1et9A01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.69 | 56.0 | 4.53e-01 | 100.0% | 90.9% |
| 5z06B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 53.0 | 4.39e-01 | 100.0% | 47.8% |
| 1konA02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.68 | 53.0 | 4.47e-01 | 98.0% | 50.0% |
| 4c91A04 | 2.60.120.1620 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 59.0 | 3.95e-01 | 100.0% | 51.3% |
| 1dyqA02 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.66 | 54.0 | 4.08e-01 | 100.0% | 73.2% |
| 3nd1A02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.66 | 56.0 | 4.36e-01 | 100.0% | 43.6% |
| 2pw9C03 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.66 | 52.0 | 3.97e-01 | 100.0% | 34.8% |
| 1mw7A02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.65 | 52.0 | 4.43e-01 | 98.0% | 52.9% |
| 2npnA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.65 | 55.0 | 4.31e-01 | 100.0% | 44.0% |
| 2dtgE06 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 53.0 | 4.24e-01 | 100.0% | 44.7% |
| 2dliA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 52.0 | 4.27e-01 | 100.0% | 48.0% |
| 5eh1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 46.0 | 3.87e-01 | 100.0% | 42.1% |
| 5hdwA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.63 | 54.0 | 4.07e-01 | 100.0% | 44.3% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.63 | 52.0 | 4.42e-01 | 100.0% | 62.0% |
| 3a21A03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.63 | 52.0 | 4.25e-01 | 100.0% | 48.5% |
| 5fljA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 46.0 | 3.13e-01 | 98.0% | 22.0% |
| 3b49A00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.62 | 47.0 | 3.18e-01 | 84.0% | 47.5% |
| 3rj2X00 | 2.60.120.1150 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 50.0 | 3.68e-01 | 100.0% | 33.8% |
| 6grsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 50.0 | 4.21e-01 | 100.0% | 51.6% |
| 2nytD00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.61 | 50.0 | 3.54e-01 | 100.0% | 32.4% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.60 | 50.0 | 4.21e-01 | 100.0% | 53.3% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.60 | 43.0 | 3.16e-01 | 78.0% | 96.4% |
| 3uh8A00 | 2.60.40.3350 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 48.0 | 3.84e-01 | 100.0% | 41.5% |
| 2q0oA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.59 | 43.0 | 2.99e-01 | 76.0% | 92.3% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.59 | 50.0 | 3.54e-01 | 100.0% | 29.3% |
| 3zq5A03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.59 | 42.0 | 3.12e-01 | 80.0% | 68.6% |
| 3rwnB00 | 2.60.120.1120 | Mainly Beta › Sandwich › Jelly Rolls › Sf6-type phage tail needle knob | 0.59 | 50.0 | 3.60e-01 | 100.0% | 34.4% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.58 | 48.0 | 4.22e-01 | 100.0% | 67.1% |
| 4ca1B02 | 2.60.210.10 | Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 0.56 | 47.0 | 3.58e-01 | 100.0% | 44.7% |
| 2lc1A00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.55 | 47.0 | 3.83e-01 | 100.0% | 93.0% |
| 2qv7A02 | 2.60.200.40 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.55 | 47.0 | 3.43e-01 | 100.0% | 61.1% |
| 3au4A02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 45.0 | 3.86e-01 | 100.0% | 70.2% |
| 3k59A07 | 1.10.132.60 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain | 0.55 | 42.0 | 3.15e-01 | 88.0% | 94.4% |
| 2xqyA03 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.54 | 45.0 | 3.45e-01 | 100.0% | 37.6% |
| 7b7nH01 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.54 | 46.0 | 3.53e-01 | 100.0% | 39.4% |
| 6cc0A01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.52 | 36.0 | 2.67e-01 | 76.0% | 39.6% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.52 | 41.0 | 3.58e-01 | 100.0% | 89.4% |
| 2f4nB02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.52 | 41.0 | 3.57e-01 | 100.0% | 69.1% |
| 1iyjB03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 39.0 | 2.97e-01 | 90.0% | 57.0% |
| 1yhpA02 | 2.60.40.1720 | Mainly Beta › Sandwich › Immunoglobulin-like › Calcium-dependent cell adhesion molecule-1 | 0.51 | 39.0 | 3.17e-01 | 98.0% | 89.2% |
| 6l4lA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.50 | 42.0 | 3.33e-01 | 100.0% | 98.3% |
| 3ec8A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 40.0 | 3.09e-01 | 98.0% | 46.8% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5014007 | 3115.2.1.0 ↗ | a+b two layers › GP2-like › GP2 › GP2 | 0.93 | 79.0 | 7.68e-01 | 100.0% | 83.6% |
| 4977431 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.81 | 72.0 | 6.61e-01 | 100.0% | 76.9% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.79 | 62.0 | 6.51e-01 | 100.0% | 95.6% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.79 | 62.0 | 6.51e-01 | 100.0% | 95.6% |
| 4937773 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.78 | 69.0 | 6.58e-01 | 100.0% | 96.6% |
| 5015713 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.76 | 66.0 | 6.30e-01 | 100.0% | 98.3% |
| 5080205 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.75 | 62.0 | 6.24e-01 | 100.0% | 92.0% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.75 | 64.0 | 6.16e-01 | 100.0% | 94.9% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.74 | 64.0 | 5.65e-01 | 100.0% | 73.3% |
| 5001166 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.73 | 59.0 | 4.35e-01 | 100.0% | 34.1% |
| 3216210 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.72 | 61.0 | 6.14e-01 | 100.0% | 96.0% |
| 5014684 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.70 | 60.0 | 5.79e-01 | 100.0% | 91.4% |
| 3917143 | 304.100.1.0 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like | 0.69 | 58.0 | 5.57e-01 | 100.0% | 96.7% |
| 5081134 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.69 | 57.0 | 5.42e-01 | 100.0% | 80.0% |
| 3942510 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.67 | 58.0 | 4.75e-01 | 100.0% | 53.7% |
| 4158495 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.66 | 54.0 | 4.55e-01 | 100.0% | 52.2% |
| 4018289 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.66 | 55.0 | 4.09e-01 | 100.0% | 85.5% |
| 4033537 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.65 | 54.0 | 3.61e-01 | 100.0% | 22.6% |
| 4180988 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.65 | 53.0 | 3.43e-01 | 100.0% | 19.3% |
| 1937224 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.65 | 55.0 | 4.31e-01 | 100.0% | 44.0% |
| 4974427 | 304.5.1.1 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II | 0.65 | 56.0 | 4.95e-01 | 98.0% | 100.0% |
| 3705856 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.64 | 51.0 | 3.18e-01 | 100.0% | 15.3% |
| 4057352 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.63 | 53.0 | 3.47e-01 | 100.0% | 21.2% |
| 3859590 | 386.1.1.248 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZNF592 | 0.62 | 45.0 | 4.59e-01 | 100.0% | 86.0% |
| 3789334 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.61 | 51.0 | 4.15e-01 | 100.0% | 47.6% |
| 3738589 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.61 | 50.0 | 4.12e-01 | 100.0% | 48.6% |
| 3816922 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.59 | 44.0 | 2.76e-01 | 84.0% | 14.6% |
| 3481479 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.56 | 41.0 | 3.13e-01 | 86.0% | 58.0% |
| 1309233 | 3145.1.1.1 ↗ | beta sandwiches › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › Herpes_glycoH_C | 0.55 | 47.0 | 3.42e-01 | 100.0% | 33.8% |
| 4448678 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.55 | 43.0 | 3.97e-01 | 100.0% | 94.7% |
| 3637444 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.54 | 46.0 | 2.98e-01 | 100.0% | 19.6% |
| 3258059 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.53 | 43.0 | 3.90e-01 | 98.0% | 92.0% |
| 3704667 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.52 | 42.0 | 2.61e-01 | 92.0% | 54.3% |
| 3290138 | 11.12.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › DUF4436 | 0.51 | 41.0 | 3.18e-01 | 100.0% | 64.3% |