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NC_028923.1__YP_009209624.1__PBI_LLAMA_75__00075

Bact-Vir

Identity

Accession:: NC_028923 ↗
Kingdom:: phage

Quality

70.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cheoctovirus› Mycobacterium_phage_Llama

TaxID: 1541823

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-77_95-133

PDB

Domain cluster: rep: OP172819.1__WAX17136.1__PF672P1_00078__00078__D2-90_226-241

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00145.24 best	DNA_methylase	32.1	1.20e-07	69.8%	14.5%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2c7rA01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.86	58.0	4.61e-01	100.0%	37.9%
6fdfA01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.79	50.0	4.12e-01	100.0%	37.9%
4h0nA01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.78	52.0	4.22e-01	99.1%	39.6%
3qv2A01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.78	49.0	3.99e-01	100.0%	36.5%
4dkjA01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.69	60.0	4.39e-01	100.0%	36.1%
4ft4A02	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.66	61.0	4.23e-01	100.0%	35.7%
2f4lA02	2.40.10.120	Mainly Beta › Beta Barrel › Thrombin, subunit H ›	0.52	22.0	3.26e-01	86.2%	100.0%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5082222	2003.1.5.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase	0.73	69.0	5.08e-01	100.0%	57.8%
3437851	2003.1.5.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase	0.71	41.0	3.41e-01	92.2%	34.4%
5004615	2003.1.5.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase	0.70	59.0	4.62e-01	100.0%	44.8%
3693759	2003.1.5.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase	0.68	62.0	4.08e-01	100.0%	65.2%
3737372	2003.1.5.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase	0.66	61.0	4.33e-01	100.0%	74.5%
4969718	2003.1.5.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase	0.66	60.0	4.68e-01	98.3%	100.0%
5021818	2003.1.5.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase	0.64	60.0	4.04e-01	100.0%	57.2%
4238737	2003.1.5.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase	0.63	59.0	4.08e-01	100.0%	50.8%
149260	2003.1.5.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase	0.62	58.0	4.12e-01	100.0%	74.1%
3620163	2003.1.5.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase	0.62	57.0	4.00e-01	100.0%	74.7%
3664880	312.1.1.2 ↗	a+b three layers › HIT-like › HIT-related › HIT-related › HIT	0.60	36.0	3.39e-01	93.1%	48.9%
4952917	2003.1.5.1 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase	0.57	48.0	3.85e-01	89.7%	95.0%
3710325	330.1.1.0 ↗	a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like	0.57	29.0	3.49e-01	87.1%	72.5%