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NC_028924.1__YP_009209663.1__AVT43_gp03__00003

Bact-Vir

NC_028924.1__YP_009209663.1__AVT43_gp03__00003

Identity

Accession:
NC_028924 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Incheonvirus› Polaribacter_phage_P12002L

TaxID: 1647386

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-60
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1s4kA00 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.76 65.0 5.29e-01 100.0% 50.8%
1x2lA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 62.0 5.56e-01 93.3% 75.3%
3b7hA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 60.0 5.58e-01 91.7% 78.9%
1x57A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 61.0 5.34e-01 96.7% 75.8%
3fmyA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 56.0 5.49e-01 95.0% 83.3%
4yg1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 57.0 5.42e-01 91.7% 77.8%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 54.0 5.19e-01 86.7% 77.5%
2bnmA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 57.0 5.35e-01 91.7% 77.0%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 56.0 5.52e-01 91.7% 89.4%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 58.0 5.37e-01 95.0% 75.3%
4ghjB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 57.0 5.28e-01 93.3% 72.4%
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 52.0 4.61e-01 91.7% 57.0%
3fymA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 56.0 5.07e-01 91.7% 74.4%
1b0nA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 57.0 4.88e-01 98.3% 84.5%
2xi8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 54.0 5.29e-01 91.7% 81.8%
7ezyA01 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.67 54.0 4.58e-01 98.3% 52.2%
1dw9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 52.0 4.66e-01 86.7% 64.4%
3f51C00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 56.0 4.90e-01 95.0% 64.4%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 55.0 4.97e-01 95.0% 68.2%
3u3wA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 54.0 5.20e-01 91.7% 79.7%
2auwB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 53.0 5.13e-01 100.0% 95.7%
7n1nB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 52.0 5.19e-01 95.0% 93.7%
2awiA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 52.0 5.05e-01 95.0% 85.1%
7zcvA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 52.0 5.17e-01 96.7% 95.2%
3tmpA01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 49.0 3.82e-01 98.3% 64.0%
3osgA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 37.0 3.72e-01 70.0% 61.7%
3phuA01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.57 46.0 3.45e-01 93.3% 34.6%
4bopB00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 46.0 3.60e-01 98.3% 66.0%
1uhsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 37.0 3.89e-01 70.0% 75.9%
4gkfA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.56 49.0 3.75e-01 100.0% 68.5%
5jzeA00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 45.0 3.45e-01 98.3% 61.0%
7o49B01 3.30.70.2110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 42.0 3.76e-01 91.7% 85.7%
1zv1A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.52 36.0 3.69e-01 100.0% 74.6%
3grfA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.51 41.0 3.18e-01 100.0% 82.4%
1ctfA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.51 39.0 3.79e-01 95.0% 75.0%
1fafA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.50 34.0 3.11e-01 70.0% 51.9%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3940276 101.1.4.4 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CUT 0.80 69.0 6.39e-01 95.0% 88.0%
3925208 101.1.4.4 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CUT 0.79 68.0 5.82e-01 95.0% 69.5%
3925203 101.1.4.4 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CUT 0.77 67.0 5.34e-01 100.0% 54.4%
3218304 101.1.4.4 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CUT 0.77 65.0 5.54e-01 93.3% 66.3%
3926196 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.77 64.0 5.74e-01 93.3% 74.1%
3288109 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.76 64.0 6.09e-01 91.7% 82.9%
3926195 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.74 65.0 5.03e-01 100.0% 81.5%
3617128 101.1.4.4 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CUT 0.74 61.0 4.99e-01 93.3% 54.8%
3587532 101.1.4.17 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.73 60.0 6.21e-01 88.3% 100.0%
4978931 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.73 60.0 5.73e-01 91.7% 78.6%
2782 101.1.4.4 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CUT 0.71 60.0 4.93e-01 95.0% 57.7%
3537934 101.1.4.4 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CUT 0.71 58.0 5.50e-01 95.0% 84.0%
4999897 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.71 58.0 5.41e-01 91.7% 76.0%
5027691 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.70 59.0 5.62e-01 93.3% 91.4%
4410932 101.1.4.27 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CYNS_N 0.70 55.0 5.30e-01 86.7% 80.0%
3868638 101.1.4.4 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CUT 0.70 59.0 5.37e-01 95.0% 78.8%
4274007 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.70 58.0 5.26e-01 91.7% 70.0%
380799 101.1.4.23 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MqsA_antitoxin 0.70 56.0 5.49e-01 95.0% 83.3%
3970029 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.70 60.0 5.55e-01 100.0% 90.0%
2888862 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.69 56.0 5.45e-01 91.7% 84.8%
3947329 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.67 54.0 5.30e-01 91.7% 83.1%
2813369 101.1.4.10 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF1870 0.67 55.0 4.54e-01 100.0% 50.0%
3965190 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.66 55.0 5.41e-01 93.3% 92.3%
5015485 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.66 55.0 5.37e-01 93.3% 84.6%
4585952 101.1.4.17 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.66 56.0 5.41e-01 96.7% 95.7%
5009786 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.66 55.0 4.74e-01 98.3% 63.0%
3206332 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 40.0 3.89e-01 71.7% 56.9%
3988311 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.64 52.0 4.88e-01 91.7% 77.3%
3989752 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.64 53.0 4.91e-01 91.7% 76.0%
1916705 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.62 53.0 4.94e-01 96.7% 77.6%
3356938 219.1.1.15 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.57 47.0 3.66e-01 100.0% 60.0%
4030106 219.1.1.15 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.57 47.0 3.58e-01 98.3% 56.4%
3475191 219.1.1.15 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.57 47.0 3.52e-01 98.3% 61.8%
3803201 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.57 36.0 3.45e-01 71.7% 54.3%
3993036 219.1.1.15 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.56 46.0 3.74e-01 100.0% 67.4%
3981264 2006.1.1.44 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.56 40.0 2.77e-01 76.7% 20.9%
3965780 138.1.1.9 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.56 39.0 3.09e-01 86.7% 36.7%
3238848 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.56 39.0 4.17e-01 100.0% 92.0%
2429118 219.1.1.15 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.55 45.0 3.44e-01 100.0% 76.8%
2391968 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.52 41.0 4.17e-01 96.7% 98.3%
3650916 192.18.1.12 ↗ alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like › DUF3593 0.52 38.0 3.14e-01 76.7% 76.2%