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NC_028924.1__YP_009209667.1__AVT43_gp07__00007
Bact-VirNC_028924.1__YP_009209667.1__AVT43_gp07__00007
Identity
- Accession:
- NC_028924 ↗
- Kingdom:
- phage
Quality
89.0
mean pLDDT
Taxonomy
TaxID: 1647386
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-64
Domain cluster:
rep: MN695334.1__QGT54418.1__b3_0174__00160__D2-64
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hywA00 | 3.30.1580.10 | Alpha Beta › 2-Layer Sandwich › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W | 0.64 | 43.0 | 4.45e-01 | 71.4% | 86.2% |
| 2dt8A01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 42.0 | 3.28e-01 | 71.4% | 94.6% |
| 4iduB01 | 1.20.142.20 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › | 0.61 | 47.0 | 3.89e-01 | 88.9% | 67.7% |
| 3zlaD01 | 1.20.142.20 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › | 0.61 | 49.0 | 4.01e-01 | 92.1% | 64.3% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 43.0 | 3.80e-01 | 74.6% | 52.1% |
| 3fysA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 41.0 | 3.16e-01 | 71.4% | 93.5% |
| 3tw8A01 | 3.30.450.200 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module | 0.60 | 44.0 | 3.45e-01 | 79.4% | 91.3% |
| 4bgpA01 | 1.20.142.20 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › | 0.60 | 47.0 | 3.89e-01 | 92.1% | 64.6% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 41.0 | 3.54e-01 | 74.6% | 49.1% |
| 6n10A01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.58 | 43.0 | 2.97e-01 | 79.4% | 84.5% |
| 2vugA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.57 | 42.0 | 4.07e-01 | 81.0% | 90.3% |
| 4bwxA03 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 45.0 | 4.17e-01 | 87.3% | 90.0% |
| 5ex2A01 | 2.40.100.10 | Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like | 0.56 | 49.0 | 3.35e-01 | 100.0% | 80.9% |
| 3p0cA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 41.0 | 3.48e-01 | 79.4% | 86.5% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 39.0 | 3.34e-01 | 74.6% | 46.8% |
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.55 | 40.0 | 4.06e-01 | 98.4% | 83.3% |
| 2dk6A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.55 | 45.0 | 3.96e-01 | 92.1% | 74.5% |
| 1vq0A02 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.55 | 40.0 | 4.16e-01 | 92.1% | 87.7% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.53 | 47.0 | 3.46e-01 | 100.0% | 45.5% |
| 4q0jA03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.53 | 42.0 | 3.31e-01 | 90.5% | 60.6% |
| 1sfnA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 38.0 | 2.62e-01 | 79.4% | 33.5% |
| 2la7A01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 42.0 | 3.51e-01 | 96.8% | 86.7% |
| 2ic2A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 3.27e-01 | 100.0% | 48.1% |
| 7l5aA02 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.51 | 35.0 | 2.80e-01 | 71.4% | 99.3% |
| 1u6gC00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.51 | 44.0 | 2.43e-01 | 98.4% | 7.0% |
| 2vifA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 41.0 | 3.42e-01 | 95.2% | 64.3% |
| 1vbkA01 | 3.30.70.1510 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like | 0.51 | 38.0 | 3.51e-01 | 82.5% | 95.2% |
| 5dx9A01 | 3.30.70.1020 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 | 0.51 | 37.0 | 3.62e-01 | 98.4% | 69.4% |
| 3nhqC03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.51 | 40.0 | 3.18e-01 | 95.2% | 39.9% |
| 3pgvA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.50 | 35.0 | 3.10e-01 | 74.6% | 53.5% |
| 4ehoB03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.50 | 38.0 | 2.89e-01 | 87.3% | 77.7% |
| 6o5cA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.50 | 42.0 | 4.01e-01 | 100.0% | 82.9% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3959440 | 4.1.1.180 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3107 | 0.76 | 67.0 | 6.64e-01 | 100.0% | 95.4% |
| 5017559 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 64.0 | 6.39e-01 | 100.0% | 96.9% |
| 4448678 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.72 | 62.0 | 5.91e-01 | 100.0% | 92.0% |
| 3280234 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.67 | 55.0 | 3.62e-01 | 92.1% | 21.5% |
| 4024700 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.66 | 47.0 | 2.87e-01 | 74.6% | 67.1% |
| 4003744 | 5067.1.1.3 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched | 0.64 | 44.0 | 2.48e-01 | 71.4% | 64.2% |
| 3392569 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.63 | 44.0 | 3.58e-01 | 74.6% | 40.0% |
| 5059796 | 4326.1.1.0 ↗ | a+b two layers › ERH-like › ERH-like › ERH-like | 0.62 | 40.0 | 3.89e-01 | 100.0% | 59.4% |
| 224425 | 3644.1.1.2 ↗ | alpha complex topology › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Bunya_nucleocap | 0.62 | 49.0 | 3.44e-01 | 92.1% | 54.3% |
| 5001696 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.62 | 43.0 | 3.77e-01 | 71.4% | 58.9% |
| 3604643 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.61 | 49.0 | 3.30e-01 | 92.1% | 99.6% |
| 4028919 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.61 | 46.0 | 3.07e-01 | 82.5% | 77.7% |
| 3543655 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.60 | 38.0 | 2.63e-01 | 100.0% | 18.2% |
| 3231161 | 5067.1.1.3 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched | 0.60 | 45.0 | 2.52e-01 | 82.5% | 40.3% |
| 4353391 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.60 | 46.0 | 2.73e-01 | 87.3% | 16.3% |
| 4995244 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.59 | 42.0 | 3.52e-01 | 74.6% | 45.5% |
| 3751173 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.59 | 50.0 | 4.76e-01 | 98.4% | 96.0% |
| 5029669 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.58 | 41.0 | 3.38e-01 | 74.6% | 41.7% |
| 5041715 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.58 | 42.0 | 3.60e-01 | 85.7% | 45.5% |
| 4977899 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 44.0 | 3.80e-01 | 87.3% | 91.8% |
| 5038375 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.58 | 36.0 | 2.62e-01 | 100.0% | 20.0% |
| 3619791 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.57 | 50.0 | 3.42e-01 | 100.0% | 80.4% |
| 4870707 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.57 | 46.0 | 3.10e-01 | 88.9% | 47.0% |
| 3336598 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.56 | 48.0 | 3.20e-01 | 95.2% | 46.4% |
| 3260247 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.56 | 46.0 | 4.30e-01 | 98.4% | 88.0% |
| 3877833 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.56 | 46.0 | 4.28e-01 | 93.7% | 86.3% |
| 4940035 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 46.0 | 3.93e-01 | 96.8% | 86.4% |
| 3493963 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.55 | 39.0 | 3.44e-01 | 76.2% | 54.0% |
| 5071935 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 44.0 | 3.62e-01 | 92.1% | 50.8% |
| 3675525 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 33.0 | 3.25e-01 | 100.0% | 54.4% |
| 3389107 | 304.9.1.95 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4780 | 0.54 | 48.0 | 4.06e-01 | 100.0% | 79.0% |
| 3588755 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 44.0 | 4.26e-01 | 100.0% | 82.4% |
| 3743593 | 59.1.1.0 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like | 0.54 | 42.0 | 4.00e-01 | 93.7% | 95.0% |
| 3254631 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.53 | 45.0 | 4.53e-01 | 95.2% | 93.8% |
| 2982157 | 223.1.1.1 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY | 0.53 | 41.0 | 3.04e-01 | 88.9% | 46.0% |
| 4871764 | 223.1.1.1 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY | 0.53 | 41.0 | 3.40e-01 | 88.9% | 70.0% |
| 2083577 | 3019.1.1.1 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN | 0.53 | 47.0 | 3.76e-01 | 100.0% | 56.5% |
| 3223489 | 223.2.1.7 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N | 0.53 | 42.0 | 3.46e-01 | 93.7% | 50.0% |
| 3424143 | 109.4.1.2687 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28645 | 0.52 | 44.0 | 2.67e-01 | 96.8% | 35.8% |
| 4264297 | 101.1.2.760 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30824 | 0.51 | 40.0 | 3.25e-01 | 88.9% | 90.4% |
| 5001318 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 40.0 | 3.51e-01 | 93.7% | 82.7% |
| 2042105 | 223.1.1.1 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY | 0.51 | 39.0 | 2.90e-01 | 90.5% | 71.6% |
| 3723733 | 223.1.1.84 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY+GAF | 0.51 | 40.0 | 2.52e-01 | 90.5% | 34.9% |
| 4928686 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 39.0 | 3.53e-01 | 85.7% | 93.3% |
| 3811338 | 109.4.1.2260 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_6, TPR_19 | 0.50 | 36.0 | 2.44e-01 | 81.0% | 21.7% |