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NC_028924.1__YP_009209675.1__AVT43_gp15__00015
Bact-VirNC_028924.1__YP_009209675.1__AVT43_gp15__00015
Identity
- Accession:
- NC_028924 ↗
- Kingdom:
- phage
Quality
88.7
mean pLDDT
Taxonomy
TaxID: 1647386
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-56
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4oq1A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 45.0 | 3.66e-01 | 100.0% | 47.5% |
| 3cedA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 48.0 | 3.99e-01 | 100.0% | 80.6% |
| 3id9B00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.55 | 47.0 | 3.64e-01 | 100.0% | 59.5% |
| 5d61A01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 45.0 | 3.37e-01 | 100.0% | 97.4% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.54 | 39.0 | 3.88e-01 | 100.0% | 73.3% |
| 4f3nA00 | 3.40.50.12710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 41.0 | 2.55e-01 | 92.5% | 67.4% |
| 2gdqA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 43.0 | 3.51e-01 | 96.2% | 58.9% |
| 1zpvA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 44.0 | 3.85e-01 | 100.0% | 91.8% |
| 1hezE00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 45.0 | 4.36e-01 | 100.0% | 86.9% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.52 | 43.0 | 4.06e-01 | 100.0% | 98.6% |
| 3o5yB00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 39.0 | 3.03e-01 | 90.6% | 85.0% |
| 2jheA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 42.0 | 3.74e-01 | 96.2% | 86.4% |
| 1bqgA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 43.0 | 3.30e-01 | 100.0% | 73.9% |
| 2jrrA01 | 2.60.260.40 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › q5lls5 like domains | 0.51 | 35.0 | 3.52e-01 | 100.0% | 73.6% |
| 2avxA00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.51 | 36.0 | 2.74e-01 | 84.9% | 72.5% |
| 4lhsA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 38.0 | 2.91e-01 | 88.7% | 98.7% |
| 1khiA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 34.0 | 3.17e-01 | 88.7% | 54.2% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3839740 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.58 | 48.0 | 3.67e-01 | 100.0% | 95.7% |
| 3837675 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.56 | 49.0 | 3.58e-01 | 100.0% | 44.7% |
| 5079196 | 1056.1.1.1 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD | 0.56 | 38.0 | 2.66e-01 | 100.0% | 18.6% |
| 4961375 | 304.165.1.0 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 | 0.56 | 45.0 | 3.47e-01 | 94.3% | 98.5% |
| 4944096 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.53 | 46.0 | 3.56e-01 | 100.0% | 96.8% |
| 4975002 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 46.0 | 4.10e-01 | 100.0% | 98.8% |
| 3507255 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.53 | 44.0 | 4.06e-01 | 100.0% | 94.7% |
| 4936600 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.52 | 45.0 | 3.52e-01 | 100.0% | 98.3% |
| 3942988 | 4187.2.1.1 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA | 0.51 | 35.0 | 3.42e-01 | 100.0% | 63.1% |
| 4025375 | 2008.1.1.86 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP | 0.51 | 37.0 | 3.05e-01 | 83.0% | 100.0% |
| 5025566 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.50 | 43.0 | 4.30e-01 | 100.0% | 96.4% |
| 4053035 | 4180.1.1.1 ↗ | a+b two layers › SpoVG-like › SpoVG-like › SpoVG-like › SpoVG | 0.50 | 35.0 | 3.10e-01 | 75.5% | 76.5% |
D2
medium
residues 60-99
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3o7iA00 | 1.10.3330.10 | Mainly Alpha › Orthogonal Bundle › UraD-like › Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase | 0.87 | 78.0 | 5.15e-01 | 100.0% | 31.3% |
| 5z5mA01 | 1.10.3330.10 | Mainly Alpha › Orthogonal Bundle › UraD-like › Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase | 0.84 | 75.0 | 4.97e-01 | 100.0% | 31.5% |
| 2qbyA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.81 | 64.0 | 4.16e-01 | 90.0% | 20.8% |
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.80 | 62.0 | 5.57e-01 | 87.5% | 61.8% |
| 5tkyA05 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.75 | 63.0 | 5.04e-01 | 100.0% | 70.1% |
| 3hlzA02 | 1.20.120.1090 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.73 | 63.0 | 4.40e-01 | 100.0% | 30.2% |
| 2qupA00 | 1.20.120.490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain | 0.73 | 49.0 | 3.47e-01 | 70.0% | 31.9% |
| 7x0fB01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.73 | 52.0 | 4.21e-01 | 75.0% | 95.9% |
| 1a3qA01 | 2.60.40.340 | Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain | 0.73 | 52.0 | 3.38e-01 | 77.5% | 19.0% |
| 6g6kC00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.68 | 52.0 | 4.36e-01 | 100.0% | 45.5% |
| 4azsA03 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.66 | 52.0 | 3.56e-01 | 87.5% | 32.4% |
| 1y97A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.65 | 56.0 | 3.56e-01 | 100.0% | 59.0% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.64 | 52.0 | 4.28e-01 | 100.0% | 72.6% |
| 6y6hA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.64 | 56.0 | 3.65e-01 | 100.0% | 29.9% |
| 4neoA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.63 | 55.0 | 4.37e-01 | 100.0% | 50.6% |
| 3cl3A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.61 | 48.0 | 3.97e-01 | 97.5% | 75.0% |
| 1vj7B01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.60 | 51.0 | 3.42e-01 | 100.0% | 69.4% |
| 3pm6A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 46.0 | 2.82e-01 | 90.0% | 87.5% |
| 1is9A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.59 | 48.0 | 2.83e-01 | 97.5% | 11.5% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.58 | 45.0 | 3.78e-01 | 100.0% | 85.9% |
| 7zcvA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 42.0 | 3.77e-01 | 85.0% | 84.1% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 47.0 | 3.22e-01 | 95.0% | 27.6% |
| 2iqtA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 47.0 | 2.86e-01 | 100.0% | 81.7% |
| 4k35A04 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.51 | 38.0 | 3.69e-01 | 95.0% | 94.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4964450 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.88 | 73.0 | 4.64e-01 | 90.0% | 20.6% |
| 3525185 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.87 | 77.0 | 5.27e-01 | 100.0% | 30.8% |
| 3750976 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.86 | 77.0 | 4.89e-01 | 100.0% | 22.2% |
| 4954375 | 601.7.1.20 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Abi_C | 0.85 | 72.0 | 5.09e-01 | 100.0% | 32.5% |
| None | — | 0.82 | 67.0 | 4.21e-01 | 92.5% | 18.5% | |
| 3982882 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.79 | 69.0 | 4.35e-01 | 97.5% | 57.8% |
| 4975876 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.77 | 62.0 | 3.54e-01 | 87.5% | 10.5% |
| 5069668 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.74 | 54.0 | 3.25e-01 | 77.5% | 43.2% |
| 4974358 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.72 | 59.0 | 4.50e-01 | 100.0% | 38.1% |
| 4974395 | 601.7.1.34 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 | 0.70 | 58.0 | 4.46e-01 | 100.0% | 40.0% |
| 5048286 | 601.7.1.34 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 | 0.69 | 56.0 | 4.22e-01 | 100.0% | 35.1% |
| 2814626 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.69 | 47.0 | 2.77e-01 | 72.5% | 16.4% |
| 4060837 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.63 | 48.0 | 2.92e-01 | 82.5% | 13.7% |
| 3487611 | 101.1.8.3 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I,Topo_C_assoc | 0.63 | 51.0 | 4.21e-01 | 92.5% | 54.7% |
| 3194898 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.62 | 44.0 | 3.51e-01 | 75.0% | 50.0% |
| 3965725 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.57 | 45.0 | 2.98e-01 | 100.0% | 36.7% |
| 3210155 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.51 | 48.0 | 3.34e-01 | 100.0% | 44.5% |