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NC_028924.1__YP_009209676.1__AVT43_gp16__00016
Bact-VirNC_028924.1__YP_009209676.1__AVT43_gp16__00016
Identity
- Accession:
- NC_028924 ↗
- Kingdom:
- phage
Quality
84.4
mean pLDDT
Taxonomy
TaxID: 1647386
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 162-210
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r31A01 | 3.30.2180.10 | Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like | 0.65 | 47.0 | 4.38e-01 | 79.6% | 72.7% |
| 2m3lA00 | 3.30.240.40 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein | 0.63 | 47.0 | 4.06e-01 | 85.7% | 51.3% |
| 2qenA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 38.0 | 3.42e-01 | 100.0% | 38.6% |
| 3au2A04 | 3.30.210.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain | 0.62 | 42.0 | 3.88e-01 | 79.6% | 53.8% |
| 1tufA01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.59 | 47.0 | 3.23e-01 | 89.8% | 73.0% |
| 3hdeC00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.58 | 48.0 | 3.43e-01 | 98.0% | 42.7% |
| 2ra9A01 | 3.10.540.10 | Alpha Beta › Roll › duf1285 like fold › duf1285 like domain | 0.54 | 42.0 | 4.09e-01 | 87.8% | 87.0% |
| 5jrjA02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.53 | 41.0 | 3.94e-01 | 98.0% | 74.6% |
| 3oa8A02 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.53 | 46.0 | 3.69e-01 | 100.0% | 58.0% |
| 1hufA00 | 3.30.1570.10 | Alpha Beta › 2-Layer Sandwich › YopH tyrosine phosphatase N-terminal domain › Protein-tyrosine phosphatase, YopH, N-terminal domain | 0.53 | 39.0 | 3.06e-01 | 83.7% | 97.6% |
| 1vx7Q02 | 3.30.60.300 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.53 | 29.0 | 3.52e-01 | 91.8% | 84.4% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 40.0 | 3.25e-01 | 85.7% | 43.6% |
| 3qaoA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.52 | 40.0 | 2.93e-01 | 100.0% | 30.7% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3737588 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.72 | 61.0 | 4.06e-01 | 98.0% | 93.5% |
| 4990476 | 386.1.1.24 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_4 | 0.66 | 50.0 | 4.32e-01 | 100.0% | 50.6% |
| 3685564 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.64 | 38.0 | 3.15e-01 | 93.9% | 34.1% |
| 3971677 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 41.0 | 2.98e-01 | 81.6% | 49.0% |
| 4568160 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.55 | 40.0 | 3.81e-01 | 98.0% | 65.6% |
| 3534103 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.55 | 36.0 | 2.69e-01 | 87.8% | 24.6% |
| 3633782 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 36.0 | 3.34e-01 | 71.4% | 76.9% |
| 4567922 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.53 | 41.0 | 3.53e-01 | 85.7% | 83.7% |
| 3845514 | 376.1.2.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 | 0.53 | 41.0 | 3.96e-01 | 91.8% | 91.7% |
| 5014662 | 327.6.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P | 0.53 | 40.0 | 3.29e-01 | 81.6% | 97.8% |
| 3176238 | 376.1.2.35 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PF27641 | 0.53 | 42.0 | 3.01e-01 | 100.0% | 92.7% |
| 4235019 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.52 | 38.0 | 2.99e-01 | 79.6% | 42.9% |
| 3623491 | 5067.1.1.3 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched | 0.51 | 42.0 | 2.34e-01 | 100.0% | 47.8% |
| 3413282 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.51 | 44.0 | 3.27e-01 | 100.0% | 57.0% |
| 3276133 | 377.9.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT | 0.51 | 30.0 | 2.81e-01 | 98.0% | 35.0% |
| 3243705 | 377.1.1.4 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › GATA | 0.50 | 38.0 | 3.80e-01 | 87.8% | 94.0% |
D2
medium
residues 83-161
Domain cluster:
representative