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NC_028924.1__YP_009209677.1__AVT43_gp17__00017
Bact-VirNC_028924.1__YP_009209677.1__AVT43_gp17__00017
Identity
- Accession:
- NC_028924 ↗
- Kingdom:
- phage
Quality
81.8
mean pLDDT
Taxonomy
TaxID: 1647386
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-63_88-340
Domain cluster:
rep: ON968456.1__UXO94048.1__Pan5_06__00007__D94-347
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.67 | 15.0 | 2.98e-01 | 92.4% | 66.3% |
| 5e1qA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 16.0 | 2.81e-01 | 71.0% | 78.1% |
| 3b42A00 | 3.30.450.290 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.53 | 20.0 | 3.12e-01 | 76.4% | 83.3% |
| 4dj3B01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 19.0 | 3.17e-01 | 70.7% | 91.9% |
| 4jgpA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 16.0 | 2.82e-01 | 71.0% | 82.8% |
| 3n9xA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 18.0 | 2.57e-01 | 85.0% | 61.0% |
| 2b02A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 18.0 | 3.23e-01 | 70.1% | 100.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3946670 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.69 | 57.0 | 6.10e-01 | 99.7% | 96.7% |
| 3942344 | 2485.3.1.19 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › PF30928 | 0.68 | 59.0 | 6.08e-01 | 93.9% | 93.7% |
| 2989340 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.63 | 57.0 | 5.77e-01 | 94.3% | 93.7% |
| 2443966 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.63 | 56.0 | 5.11e-01 | 94.3% | 88.0% |
| 2899245 | 2485.3.1.10 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 | 0.61 | 56.0 | 5.38e-01 | 94.6% | 94.5% |
| 3701881 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.56 | 25.0 | 3.19e-01 | 84.7% | 67.9% |
| 3781073 | 223.2.1.29 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 | 0.55 | 19.0 | 2.92e-01 | 75.8% | 70.0% |
| 4290531 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.55 | 14.0 | 2.60e-01 | 70.1% | 70.0% |
| 3961411 | 223.1.1.40 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Rv3651-like_middle | 0.53 | 21.0 | 3.37e-01 | 71.3% | 91.2% |
| 4220910 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.53 | 18.0 | 2.75e-01 | 93.9% | 67.4% |
| 3653398 | 331.9.1.10 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF28631 | 0.53 | 23.0 | 3.16e-01 | 86.6% | 78.7% |
| 4970968 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.52 | 19.0 | 3.04e-01 | 77.7% | 85.0% |
| 4974181 | 331.3.1.74 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF27226 | 0.52 | 18.0 | 3.11e-01 | 78.3% | 92.9% |
| 4159587 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.52 | 19.0 | 3.03e-01 | 71.3% | 84.2% |
| 3217492 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 21.0 | 3.11e-01 | 77.7% | 82.9% |
| 3415581 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 19.0 | 3.27e-01 | 70.4% | 100.0% |
| 3986460 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.50 | 17.0 | 2.90e-01 | 71.0% | 82.5% |