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NC_028924.1__YP_009209700.1__AVT43_gp40__00040

Bact-Vir

NC_028924.1__YP_009209700.1__AVT43_gp40__00040

Identity

Accession:
NC_028924 ↗
Kingdom:
phage

Quality

82.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-57
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 59.0 6.23e-01 96.2% 93.3%
3x1oA00 1.20.120.1790 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.79 71.0 5.05e-01 100.0% 59.7%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 63.0 5.45e-01 100.0% 58.5%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 64.0 5.45e-01 100.0% 57.6%
1zq3P00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 60.0 5.49e-01 100.0% 67.6%
1vfiA00 1.10.246.100 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 0.73 48.0 3.95e-01 71.2% 37.9%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 52.0 4.88e-01 100.0% 64.2%
2x64A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 47.0 3.67e-01 100.0% 32.7%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.69 59.0 4.95e-01 100.0% 90.4%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 57.0 5.59e-01 96.2% 96.6%
2p11A02 1.10.286.50 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.68 52.0 4.67e-01 84.6% 63.5%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.68 58.0 4.93e-01 100.0% 69.2%
3f4sA02 1.10.40.80 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › 0.65 50.0 4.70e-01 84.6% 75.0%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 4.90e-01 98.1% 69.3%
1ng6A02 1.10.10.410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 50.0 4.94e-01 90.4% 87.7%
2opeA00 3.30.540.20 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › 0.64 54.0 4.23e-01 100.0% 67.5%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.64 55.0 4.78e-01 100.0% 73.2%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 54.0 4.92e-01 100.0% 87.8%
5w36B01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.63 54.0 4.05e-01 100.0% 93.3%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 51.0 4.77e-01 94.2% 98.5%
3wa8B00 1.10.520.40 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › CRISPR-associated protein Cse2 0.60 50.0 3.58e-01 100.0% 77.7%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 48.0 4.67e-01 96.2% 86.7%
3cx5A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.60 50.0 3.40e-01 100.0% 72.6%
2doeA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.59 49.0 4.31e-01 98.1% 65.1%
2k85A00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.58 47.0 4.51e-01 100.0% 81.5%
1l9lA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.56 45.0 4.18e-01 100.0% 97.3%
3iqtA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.55 46.0 3.69e-01 100.0% 73.7%
3ehmA03 1.20.120.840 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain 0.55 43.0 3.51e-01 92.3% 97.5%
1jr8A00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.55 46.0 3.76e-01 100.0% 81.0%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.55 41.0 3.79e-01 88.5% 69.9%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 39.0 3.45e-01 76.9% 64.2%
1rx0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 41.0 2.98e-01 84.6% 89.0%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.53 41.0 3.76e-01 98.1% 62.7%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 44.0 3.36e-01 100.0% 49.6%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.51 41.0 4.04e-01 90.4% 86.0%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 36.0 3.53e-01 80.8% 75.4%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3421598 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.93 87.0 6.35e-01 100.0% 48.0%
3636036 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.92 80.0 7.60e-01 100.0% 80.0%
3312431 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.92 85.0 6.24e-01 100.0% 48.0%
3442297 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.92 85.0 7.10e-01 100.0% 71.4%
3367461 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.92 84.0 6.19e-01 100.0% 48.0%
3367703 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.91 83.0 6.12e-01 100.0% 48.0%
3334694 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.91 83.0 6.94e-01 100.0% 70.6%
3296786 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.91 83.0 6.16e-01 100.0% 50.0%
3311239 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.90 81.0 6.00e-01 100.0% 48.0%
3650038 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.89 80.0 5.84e-01 100.0% 44.4%
4013698 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.89 81.0 7.45e-01 100.0% 81.5%
3664835 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.88 79.0 5.86e-01 100.0% 48.0%
3420021 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.88 79.0 5.88e-01 100.0% 48.0%
3715143 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.86 76.0 6.49e-01 100.0% 62.5%
3455132 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.86 77.0 5.81e-01 100.0% 49.2%
3909922 101.1.1.12 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.85 72.0 7.37e-01 98.1% 96.0%
3706618 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.85 74.0 6.44e-01 98.1% 65.3%
3646654 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 76.0 5.73e-01 100.0% 49.2%
3908865 101.1.2.536 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.84 71.0 6.99e-01 98.1% 87.3%
3620979 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 70.0 6.94e-01 100.0% 90.9%
3606798 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 67.0 6.59e-01 100.0% 98.2%
3450546 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 67.0 5.20e-01 100.0% 50.0%
3738343 101.1.1.79 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.75 64.0 6.19e-01 100.0% 85.0%
4014609 101.1.1.79 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.75 63.0 5.94e-01 100.0% 78.5%
4251816 4973.1.1.1 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.74 57.0 5.31e-01 84.6% 83.1%
3690869 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 62.0 5.13e-01 98.1% 56.8%
3199759 101.1.1.20 alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A 0.73 62.0 5.17e-01 100.0% 93.7%
3767144 101.1.1.286 alpha arrays › HTH › HTH › Three-helical HTH › PF27813 0.72 57.0 5.85e-01 92.3% 94.0%
4014593 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 56.0 5.51e-01 100.0% 81.8%
3935353 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 59.0 5.11e-01 100.0% 59.0%
5058390 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.71 59.0 4.14e-01 96.2% 32.8%
3579230 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.69 59.0 3.69e-01 100.0% 35.9%
4232722 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.68 58.0 4.01e-01 100.0% 31.9%
3215866 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 58.0 5.75e-01 98.1% 94.5%
3422646 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 51.0 5.00e-01 100.0% 75.0%
5069160 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.68 55.0 3.94e-01 98.1% 30.9%
4064960 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.67 56.0 3.93e-01 96.2% 31.1%
3597985 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 4.89e-01 100.0% 62.5%
5021067 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 4.58e-01 100.0% 65.7%
3580853 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 53.0 5.00e-01 92.3% 80.0%
3237792 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.66 51.0 4.64e-01 90.4% 72.0%
4111666 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.66 54.0 3.81e-01 98.1% 31.9%
4528028 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.65 53.0 3.71e-01 98.1% 28.0%
3814136 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 5.24e-01 100.0% 89.1%
3714843 592.6.1.0 alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain 0.65 53.0 4.50e-01 100.0% 53.0%
5035624 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.65 55.0 4.78e-01 100.0% 62.4%
3454767 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 53.0 5.24e-01 98.1% 89.1%
4558241 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.64 52.0 3.70e-01 98.1% 29.5%
4930514 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.64 53.0 3.80e-01 98.1% 31.4%
3599725 1091.1.1.0 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.64 52.0 4.85e-01 90.4% 73.8%
4028797 1091.1.1.1 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s 0.64 52.0 4.85e-01 90.4% 73.8%
3467989 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 51.0 4.98e-01 98.1% 80.0%
4937450 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.64 53.0 3.66e-01 98.1% 27.6%
4355585 101.1.1.304 alpha arrays › HTH › HTH › Three-helical HTH › GatB_Yqey 0.63 52.0 5.05e-01 98.1% 95.0%
5068636 4953.1.1.2 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C 0.63 48.0 4.13e-01 84.6% 54.1%
3711005 1091.1.1.0 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.63 53.0 5.12e-01 96.2% 86.7%
3534466 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.62 50.0 4.80e-01 98.1% 86.2%
3515490 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 52.0 4.68e-01 100.0% 69.3%
3516468 1091.1.1.1 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s 0.61 50.0 4.58e-01 92.3% 71.4%
1165372 101.1.2.9 alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV 0.61 50.0 3.83e-01 100.0% 41.3%
3335062 101.1.10.36 alpha arrays › HTH › HTH › Cyclin-like › MOM1 0.61 50.0 3.93e-01 100.0% 74.4%
4456736 610.3.1.1 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.59 47.0 3.43e-01 96.2% 33.7%
3985403 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.59 39.0 3.49e-01 71.2% 57.5%
3975669 162.1.1.0 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.56 45.0 3.78e-01 98.1% 89.5%
5024245 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.53 41.0 3.24e-01 100.0% 40.0%