Back to structures

NC_028924.1__YP_009209712.1__AVT43_gp52__00052

Bact-Vir

NC_028924.1__YP_009209712.1__AVT43_gp52__00052

Identity

Accession:
NC_028924 ↗
Kingdom:
phage

Quality

82.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-81
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1n4kA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 42.0 3.55e-01 74.4% 98.6%
1ggpB02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 40.0 3.49e-01 74.4% 99.2%
3zx7A02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 40.0 3.41e-01 76.9% 97.1%
2sliA03 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.55 38.0 3.53e-01 71.8% 89.0%
4bq6F00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.55 40.0 3.31e-01 78.2% 79.9%
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 34.0 3.51e-01 70.5% 93.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3927353 6.1.1.4 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.57 40.0 3.30e-01 74.4% 86.7%
4024411 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 34.0 3.75e-01 82.1% 90.9%
4128832 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.52 39.0 3.08e-01 80.8% 43.5%
3801304 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 42.0 3.59e-01 93.6% 76.4%
3213942 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 37.0 3.37e-01 76.9% 92.7%